SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000204
Gene Symbol: CFI
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.109741049G>A COSM3599037 TCGA-EE-A3AC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-98-3p tcTGTATAGatgcca CUAUACAA m7a (m6a->m7a) HHFCT_115974_cluster-17753_3_8
hsa-let-7a-3p tcTGTATAGatgcca CUAUACAA m7a (m6a->m7a) HHFCT_115974_cluster-17753_3_8
hsa-let-7b-3p tcTGTATAGatgcca CUAUACAA m7a (m6a->m7a) HHFCT_115974_cluster-17753_3_8
hsa-let-7f-1-3p tcTGTATAGatgcca CUAUACAA m7a (m6a->m7a) HHFCT_115974_cluster-17753_3_8
hsa-let-7f-2-3p tCTGTATAGatgcca CUAUACAG m8a (m7a->m8a) HHFCT_115974_cluster-17753_3_8
hsa-miR-1284 tcTGTATAGAtgcca UCUAUACA m8a Created HHFCT_115974_cluster-17753_3_8

Mutation Mutation ID Sample Name Cancer Type
chr4:g.109741044C>T COSM4671858 T2932 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4642 atgGATGCCAacaat AUGGCAUC m7b Disrupted HHFCT_115974_cluster-17753_3_8
hsa-miR-489-3p atgGATGTCAacaat GUGACAUC m7b Created HHFCT_115974_cluster-17753_3_8
hsa-miR-653-5p atggatgTCAACAat GUGUUGAA m6b Created HHFCT_115974_cluster-17753_3_8
hsa-miR-3913-3p atgGATGTCaacaat AGACAUCA m6b Created HHFCT_115974_cluster-17753_3_8

Mutation Mutation ID Sample Name Cancer Type
chr4:g.109740857C>G COSN7723774 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-526b-5p tttttctCTCAAGAg CUCUUGAG m7b Disrupted HHFCT_115973_cluster-17753_2_7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser