SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000195
Gene Symbol: HPS1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425857G>A COSM3790391 TCGA-FJ-A3ZE-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2682-5p ACTGCCTGcccctgt CAGGCAGU m8a Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-34b-5p ACTGCCTAcccctgt UAGGCAGU m8a Created HHFCT_18750_cluster-3118_2_9
hsa-miR-449c-5p ACTGCCTAcccctgt UAGGCAGU m8a Created HHFCT_18750_cluster-3118_2_9
hsa-miR-4688 actgccTGCCCCTgt UAGGGGCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-486-3p actgcCTGCCCCtgt CGGGGCAG m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6721-5p actgCCTGCCCctgt UGGGCAGG m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6743-5p actgccTGCCCCTgt AAGGGGCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6806-5p acTGCCTACccctgt UGUAGGCA m7b (m6b->m7b) HHFCT_18750_cluster-3118_2_9
hsa-miR-2682-5p ACTGCCTGcccctgt CAGGCAGU m8a Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-34b-5p ACTGCCTAcccctgt UAGGCAGU m8a Created HHFCT_18750_cluster-3118_2_9
hsa-miR-449c-5p ACTGCCTAcccctgt UAGGCAGU m8a Created HHFCT_18750_cluster-3118_2_9
hsa-miR-4688 actgccTGCCCCTgt UAGGGGCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-486-3p actgcCTGCCCCtgt CGGGGCAG m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6721-5p actgCCTGCCCctgt UGGGCAGG m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6743-5p actgccTGCCCCTgt AAGGGGCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6806-5p acTGCCTACccctgt UGUAGGCA m7b (m6b->m7b) HHFCT_18750_cluster-3118_2_9

Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425850T>C COSM4815326 TCGA-A8-A07Z-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1909-3p gCCCCTGCGgcaggg CGCAGGGG m8a (m7a->m8a) HHFCT_18750_cluster-3118_2_9
hsa-miR-3064-3p gccccTGTGGCAggg UUGCCACA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-4722-3p gcccctgTGGCAGGg ACCUGCCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6722-3p gCCCCTGCggcaggg UGCAGGGG m7b Created HHFCT_18750_cluster-3118_2_9
hsa-miR-6727-3p gcccctgTGGCAGGg UCCUGCCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6886-5p gccCCTGCGGcaggg CCCGCAGG m7b Created HHFCT_18750_cluster-3118_2_9
hsa-miR-1909-3p gCCCCTGCGgcaggg CGCAGGGG m8a (m7a->m8a) HHFCT_18750_cluster-3118_2_9
hsa-miR-3064-3p gccccTGTGGCAggg UUGCCACA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-4722-3p gcccctgTGGCAGGg ACCUGCCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6722-3p gCCCCTGCggcaggg UGCAGGGG m7b Created HHFCT_18750_cluster-3118_2_9
hsa-miR-6727-3p gcccctgTGGCAGGg UCCUGCCA m7b Disrupted HHFCT_18750_cluster-3118_2_9
hsa-miR-6886-5p gccCCTGCGGcaggg CCCGCAGG m7b Created HHFCT_18750_cluster-3118_2_9

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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