SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000158
Gene Symbol: GBE1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.81761462A>T COSM3597747 TCGA-EE-A2GU-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1256 gcgctCAATGCCgcc AGGCAUUG m7b Disrupted HHFCT_105460_uc003dqg.2_56_12
hsa-miR-1256 gcgctCAATGCCgcc AGGCAUUG m7b Disrupted HHFCT_105460_uc003dqg.2_56_12

Mutation Mutation ID Sample Name Cancer Type
chr3:g.81761448G>A COSM1425549 TCGA-AA-3815-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3157-5p ccTGGCTGAcgtgcc UUCAGCCA m7b (m7b->m6b) HHFCT_105460_uc003dqg.2_56_12
hsa-miR-4691-3p ccTGGCTGacgtgcc CCAGCCAC m6b Disrupted HHFCT_105460_uc003dqg.2_56_12
hsa-miR-6858-3p cCTGGCTGacgtgcc CAGCCAGC m7a Disrupted HHFCT_105460_uc003dqg.2_56_12
hsa-miR-3157-5p ccTGGCTGAcgtgcc UUCAGCCA m7b (m7b->m6b) HHFCT_105460_uc003dqg.2_56_12
hsa-miR-4691-3p ccTGGCTGacgtgcc CCAGCCAC m6b Disrupted HHFCT_105460_uc003dqg.2_56_12
hsa-miR-6858-3p cCTGGCTGacgtgcc CAGCCAGC m7a Disrupted HHFCT_105460_uc003dqg.2_56_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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