SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000033
Gene Symbol: ABCD1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729563G>A COSM4822849 TCGA-EK-A2R8-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-3p gctTTCAGAGGttga CCUCUGAA m8a Disrupted HHFCT_169241_cluster-24131_11_8
hsa-miR-3150a-5p gctttcaGAGGTTGa CAACCUCG m7a Disrupted HHFCT_169241_cluster-24131_11_8
hsa-miR-3150b-5p gctttcaGAGGTTGa CAACCUCG m7a Disrupted HHFCT_169241_cluster-24131_11_8
hsa-miR-4766-5p gCTTTCAGAggttga UCUGAAAG m8a (m8a->m7a) HHFCT_169241_cluster-24131_11_8
hsa-miR-488-3p gCTTTCAAaggttga UUGAAAGG m7a Created HHFCT_169241_cluster-24131_11_8
hsa-miR-510-3p gcTTTCAAaggttga AUUGAAAC m6b Created HHFCT_169241_cluster-24131_11_8
hsa-miR-6782-3p gctttCAAAGGTtga CACCUUUG m7b Created HHFCT_169241_cluster-24131_11_8

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729357G>A COSM4885310 OSCC-GB_00640111 [upper_aerodigestive_tract][mouth][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4649-3p gcGCCTCAGgcctgc UCUGAGGC m7b (m6b->m7b) HHFCT_169240_cluster-24131_10_16
hsa-miR-4650-5p gcgcctcAGGCCTGc UCAGGCCU m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-4747-3p gcgcctCGGGCCTgc AAGGCCCG m7b Disrupted HHFCT_169240_cluster-24131_10_16
hsa-miR-544b gcgCCTCAGGcctgc ACCUGAGG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-6765-5p gCGCCTCAggcctgc GUGAGGCG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-4649-3p gcGCCTCAGgcctgc UCUGAGGC m7b (m6b->m7b) HHFCT_169240_cluster-24131_10_16
hsa-miR-4650-5p gcgcctcAGGCCTGc UCAGGCCU m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-4747-3p gcgcctCGGGCCTgc AAGGCCCG m7b Disrupted HHFCT_169240_cluster-24131_10_16
hsa-miR-544b gcgCCTCAGGcctgc ACCUGAGG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-6765-5p gCGCCTCAggcctgc GUGAGGCG m7b Created HHFCT_169240_cluster-24131_10_16

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729355T>C COSM278550 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1538 gagcgccCCGGGCCt CGGCCCGG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-3197 gaGCGCCTCgggcct GGAGGCGC m7b (m7b->m6b) HHFCT_169240_cluster-24131_10_16
hsa-miR-4532 gagcgCCCCGGGcct CCCCGGGG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-4745-3p gagcgccCCGGGCCt UGGCCCGG m7b Created HHFCT_169240_cluster-24131_10_16
hsa-miR-6784-5p gagcGCCCCGGgcct GCCGGGGC m7b Created HHFCT_169240_cluster-24131_10_16

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729351C>T COSM4107809 TCGA-HU-A4GT-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3197 tgtggaGCGCCTCgg GGAGGCGC m7b Disrupted HHFCT_169240_cluster-24131_10_16
hsa-miR-3197 tgtggaGCGCCTCgg GGAGGCGC m7b Disrupted HHFCT_169240_cluster-24131_10_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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