SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_022550
Gene Symbol: XRCC4
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.83353201C>T COSM1070796 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-371a-5p agaaacTTTGAGaaa ACUCAAAC m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-371b-5p agaaacTTTGAGaaa ACUCAAAA m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-372-5p agaaacTTTGAGaaa CCUCAAAU m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-373-5p agaaacTTTGAGaaa ACUCAAAA m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-3973 agaaACTTTGagaaa ACAAAGUA m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-4330 agaaacTCTGAGaaa CCUCAGAU m6b Disrupted HHFKP_118833_cluster-18128_15_8
hsa-miR-513c-5p agaaactTTGAGAAa UUCUCAAG m7a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-514b-5p agaaactTTGAGAAa UUCUCAAG m7a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-520g-3p agaaACTTTGagaaa ACAAAGUG m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-520h agaaACTTTGagaaa ACAAAGUG m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-561-3p agAAACTTTGagaaa CAAAGUUU m8a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-616-5p agaaacTTTGAGaaa ACUCAAAA m6b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-759 agaaACTCTGagaaa GCAGAGUG m6b Disrupted HHFKP_118833_cluster-18128_15_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83353177G>T COSM1620609 HX14T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-3p catctCAGCTGAaaa UCAGCUGG m7a Disrupted HHFKP_118833_cluster-18128_15_8
hsa-miR-1245b-3p catcTCATCTGAaaa UCAGAUGA m8a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-3942-3p catctcATCTGAAAa UUUCAGAU m8a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-5100 catctcATCTGAAaa UUCAGAUC m7a Created HHFKP_118833_cluster-18128_15_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83353163A>G COSM267775 TCGA-AA-3672-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-204-5p tctaAAAGGGAgcac UUCCCUUU m7b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-211-5p tctaAAAGGGAgcac UUCCCUUU m7b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-4268 tctaaaaAGGAGCac GGCUCCUC m6b Disrupted HHFKP_118833_cluster-18128_15_8
hsa-miR-4287 tctaaAAGGGAGcac UCUCCCUU m7b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-4448 tctaaaAAGGAGCac GGCUCCUU m7b Disrupted HHFKP_118833_cluster-18128_15_8
hsa-miR-4469 tctaaaAGGGAGCac GCUCCCUC m7a Created HHFKP_118833_cluster-18128_15_8
hsa-miR-4685-3p tctaaAAGGGAGcac UCUCCCUU m7b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-6772-3p tctaaaaAGGAGCAc UUGCUCCU m7b Disrupted HHFKP_118833_cluster-18128_15_8
hsa-miR-6832-3p tctAAAAGGGagcac ACCCUUUU m7b Created HHFKP_118833_cluster-18128_15_8
hsa-miR-7106-3p tctaaaAGGGAGCac AGCUCCCU m7b Created HHFKP_118833_cluster-18128_15_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83161739G>A COSN37019
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148a-5p agcataaAGAACTTc AAAGUUCU m7b Created HHFKP_118826_cluster-18128_8_8
hsa-miR-5584-3p agcataAAGAACTtc UAGUUCUU m7b Created HHFKP_118826_cluster-18128_8_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83120600A>T COSN2119747 RK001_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4311 atgTCTCTTTgtgtg GAAAGAGA m7b Created HHFKP_118821_cluster-18128_3_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83104966T>A COSM3856670 TCGA-CG-5728-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4424 cccagtaTAACTCat AGAGUUAA m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-4424 cccagtaTAACTCat AGAGUUAA m6b Disrupted HPSEF_17783_G21479.1_82400781

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83104961C>T COSM3618380 TCGA-EE-A3AA-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-5p ctGAACCCagtataa GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p ctgaACCCAGTataa ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-23a-5p ctGAACCCagtataa GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p ctgaACCCAGTataa ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83104960C>A COSM4625612 DLD1 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-124-5p tcTGAACACagtata CGUGUUCA m7b (m6b->m7b) HPSEF_17783_G21479.1_82400781
hsa-miR-23a-5p tctGAACCCagtata GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-4318 tctgaaCACAGTata CACUGUGG m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-4693-5p tctgaaCACAGTATa AUACUGUG m8a Created HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p tctgaACCCAGTata ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-892a tctgaACACAGTata CACUGUGU m7b Created HPSEF_17783_G21479.1_82400781
hsa-miR-124-5p tcTGAACACagtata CGUGUUCA m7b (m6b->m7b) HPSEF_17783_G21479.1_82400781
hsa-miR-23a-5p tctGAACCCagtata GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-4318 tctgaaCACAGTata CACUGUGG m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-4693-5p tctgaaCACAGTATa AUACUGUG m8a Created HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p tctgaACCCAGTata ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-892a tctgaACACAGTata CACUGUGU m7b Created HPSEF_17783_G21479.1_82400781

Mutation Mutation ID Sample Name Cancer Type
chr5:g.83104959C>G COSM3618379 TCGA-DA-A3F8-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-3p ttctgaaGCCAGTat AACUGGCC m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-193b-3p ttctgaaGCCAGTat AACUGGCC m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-23a-5p ttctGAACCCagtat GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-664a-5p ttctgaAGCCAGTat ACUGGCUA m7a Created HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p ttctgaACCCAGTat ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-892b ttctgaAGCCAGTat CACUGGCU m7b Created HPSEF_17783_G21479.1_82400781
hsa-miR-193a-3p ttctgaaGCCAGTat AACUGGCC m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-193b-3p ttctgaaGCCAGTat AACUGGCC m6b Created HPSEF_17783_G21479.1_82400781
hsa-miR-23a-5p ttctGAACCCagtat GGGGUUCC m6b Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-664a-5p ttctgaAGCCAGTat ACUGGCUA m7a Created HPSEF_17783_G21479.1_82400781
hsa-miR-6861-5p ttctgaACCCAGTat ACUGGGUA m7a Disrupted HPSEF_17783_G21479.1_82400781
hsa-miR-892b ttctgaAGCCAGTat CACUGGCU m7b Created HPSEF_17783_G21479.1_82400781

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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