SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NR_027299
Gene Symbol: XPC
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.14168354G>A COSM1039321 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1229-3p gggtgacGTGAGAGa CUCUCACC m7a Disrupted HHKTA_34677_NM_004628|516|555|2.16339705258786|0.583662020082963
hsa-miR-6879-3p GGGTGACAtgagaga UGUCACCC m8a Created HHKTA_34677_NM_004628|516|555|2.16339705258786|0.583662020082963

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14167191G>A COSM4898212 TCGA-EE-A3JB-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4535 aataaagAGGTCCAt GUGGACCU m7b Created HHFKP_95688_cluster-16407_10_53
hsa-miR-492 aataaagAGGTCCat AGGACCUG m6b Created HHFKP_95688_cluster-16407_10_53
hsa-miR-659-5p aataaagAGGTCCat AGGACCUU m6b Created HHFKP_95688_cluster-16407_10_53
hsa-miR-6821-3p aataaAGAGGTCcat UGACCUCU m7b Created HHFKP_95688_cluster-16407_10_53
hsa-miR-6846-3p aataaAGGGGTCcat UGACCCCU m7b Disrupted HHFKP_95688_cluster-16407_10_53
hsa-miR-6861-3p aataaaGAGGTCCAt UGGACCUC m8a Created HHFKP_95688_cluster-16407_10_53
hsa-miR-711 aataaagGGGTCCat GGGACCCA m6b Disrupted HHFKP_95688_cluster-16407_10_53

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14165501A>G COSM4793473 CHC313T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4534 cctgTCCATCatccc GGAUGGAG m6b Disrupted HHFCT_102885_cluster-16407_12_6
hsa-miR-6744-5p cctgtccGTCATCCc UGGAUGAC m7b Created HHFCT_102885_cluster-16407_12_6
hsa-miR-4534 cctgTCCATCatccc GGAUGGAG m6b Disrupted HHFKP_95687_cluster-16407_9_24
hsa-miR-6744-5p cctgtccGTCATCCc UGGAUGAC m7b Created HHFKP_95687_cluster-16407_9_24

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14164903A>C COSM278160 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148a-5p atgcAGAACTTTcag AAAGUUCU m8a Disrupted HHFCT_102884_cluster-16407_11_28
hsa-miR-148b-5p atgCAGAACTTtcag AAGUUCUG m8a Disrupted HHFCT_102884_cluster-16407_11_28
hsa-miR-4527 atGCAGACCtttcag UGGUCUGC m7b (m6b->m7b) HHFCT_102884_cluster-16407_11_28
hsa-miR-488-3p atgcagaCCTTTCAg UUGAAAGG m7b Created HHFCT_102884_cluster-16407_11_28
hsa-miR-544a aTGCAGAActttcag AUUCUGCA m7b Disrupted HHFCT_102884_cluster-16407_11_28
hsa-miR-5681a atgcagaCCTTTCag AGAAAGGG m6b Created HHFCT_102884_cluster-16407_11_28
hsa-miR-6503-5p atGCAGACCTttcag AGGUCUGC m8a Created HHFCT_102884_cluster-16407_11_28
hsa-miR-6730-5p atgcagACCTTTCag AGAAAGGU m7b Created HHFCT_102884_cluster-16407_11_28
hsa-miR-6874-3p atgCAGAACTttcag CAGUUCUG m7b Disrupted HHFCT_102884_cluster-16407_11_28

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14164887C>T COSM3940321 ESCC-212T [oesophagus][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-200a-5p cagtgaaTAAGATaa CAUCUUAC m6b Created HHFCT_102884_cluster-16407_11_28
hsa-miR-200b-5p cagtgaaTAAGATaa CAUCUUAC m6b Created HHFCT_102884_cluster-16407_11_28

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14164835G>A COSM1039312 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-516a-5p tctgCTCGAGAtgat UUCUCGAG m7b Disrupted HHHNA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-526b-5p tctgCTCAAGAtgat CUCUUGAG m7b Created HHHNA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-516a-5p tctgCTCGAGAtgat UUCUCGAG m7b Disrupted HHHSA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-526b-5p tctgCTCAAGAtgat CUCUUGAG m7b Created HHHSA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14164818G>A COSM4607060 2293765 [adrenal_gland][adrenal_gland][adrenal_cortical_carcinoma][non_functioning]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3619-3p ggaatTGGTCCatgt GGGACCAU m6b Disrupted HHHNA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-4776-5p ggaatTGGTCCAtgt GUGGACCA m7b Disrupted HHHNA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-490-5p ggaattgATCCATGt CCAUGGAU m7b Created HHHNA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-3619-3p ggaatTGGTCCatgt GGGACCAU m6b Disrupted HHHSA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-4776-5p ggaatTGGTCCAtgt GUGGACCA m7b Disrupted HHHSA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438
hsa-miR-490-5p ggaattgATCCATGt CCAUGGAU m7b Created HHHSA_16070_XPC|NM_001145769|exon_CDS|-5.88064055901361|0.121509670759438

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14148713G>C COSM116521 TCGA-24-1422-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-3p cgagTTTGGGaatgt GCCCAAAG m6b Disrupted HHKTB_3847_NM_004628|2373|2412|31.0788075683112|0.583662020082963

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14148710A>G COSM4741678 T3306 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6729-3p gtttGGGGATGtgta UCAUCCCC m7b Created HHKTB_3847_NM_004628|2373|2412|31.0788075683112|0.583662020082963

Mutation Mutation ID Sample Name Cancer Type
chr3:g.14148671T>G COSM4054966 SS6003320 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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