SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0033142
Gene Symbol: VRK1
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr14:g.96872371C>T COSN8159996 ASHPC_0011_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-128-3p tgcaaaaCACTGTGc UCACAGUG m7b Disrupted HPKTA_19044_G20563.1_97338707
hsa-miR-144-3p tgcaaaATACTGTgc UACAGUAU m7b Created HPKTA_19044_G20563.1_97338707
hsa-miR-16-1-3p tgcaaAATACTGtgc CCAGUAUU m7b Created HPKTA_19044_G20563.1_97338707
hsa-miR-19a-5p tGCAAAACactgtgc AGUUUUGC m7b Disrupted HPKTA_19044_G20563.1_97338707
hsa-miR-19b-1-5p tGCAAAACactgtgc AGUUUUGC m7b Disrupted HPKTA_19044_G20563.1_97338707
hsa-miR-19b-2-5p tGCAAAACactgtgc AGUUUUGC m7b Disrupted HPKTA_19044_G20563.1_97338707
hsa-miR-216a-3p tgcaaaaCACTGTGc UCACAGUG m7b Disrupted HPKTA_19044_G20563.1_97338707
hsa-miR-3681-3p tgcaaaaCACTGTGc ACACAGUG m7b Disrupted HPKTA_19044_G20563.1_97338707

Mutation Mutation ID Sample Name Cancer Type
chr14:g.96860690C>A COSM165520 PD4601a [NS][NS][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-3p tggacctCAGTGTTg UAACACUG m7b Disrupted HHHNH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547
hsa-miR-200a-3p tggacctCAGTGTTg UAACACUG m7b Disrupted HHHNH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547
hsa-miR-7162-3p tggACCTCAGtgttg UCUGAGGU m7b Disrupted HHHNH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547
hsa-miR-141-3p tggacctCAGTGTTg UAACACUG m7b Disrupted HHHSH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547
hsa-miR-200a-3p tggacctCAGTGTTg UAACACUG m7b Disrupted HHHSH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547
hsa-miR-7162-3p tggACCTCAGtgttg UCUGAGGU m7b Disrupted HHHSH_4195_VRK1|NM_003384|exon_CDS|-7.30585360485434|-1.32628799924547

Mutation Mutation ID Sample Name Cancer Type
chr14:g.96860604G>A COSM3968991 TCGA-FG-6692-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HHFCT_48812_uc001yft.1_17_8
hsa-miR-30d-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HHFCT_48812_uc001yft.1_17_8
hsa-miR-30e-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HHFCT_48812_uc001yft.1_17_8
hsa-miR-3591-5p ctACACTAAAaaacc UUUAGUGU m8a Created HHFCT_48812_uc001yft.1_17_8
hsa-miR-4276 ctaCACTGAaaaacc CUCAGUGA m6b Disrupted HHFCT_48812_uc001yft.1_17_8
hsa-miR-4302 ctACACTGaaaaacc CCAGUGUG m6b Disrupted HHFCT_48812_uc001yft.1_17_8
hsa-miR-6733-3p ctACACTGAaaaacc UCAGUGUC m7a (m7a->m6a) HHFCT_48812_uc001yft.1_17_8
hsa-miR-30a-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HPSEF_7144_G8592.1_97326956
hsa-miR-30d-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HPSEF_7144_G8592.1_97326956
hsa-miR-30e-3p ctacACTGAAAaacc CUUUCAGU m7b Disrupted HPSEF_7144_G8592.1_97326956
hsa-miR-3591-5p ctACACTAAAaaacc UUUAGUGU m8a Created HPSEF_7144_G8592.1_97326956
hsa-miR-4276 ctaCACTGAaaaacc CUCAGUGA m6b Disrupted HPSEF_7144_G8592.1_97326956
hsa-miR-4302 ctACACTGaaaaacc CCAGUGUG m6b Disrupted HPSEF_7144_G8592.1_97326956
hsa-miR-6733-3p ctACACTGAaaaacc UCAGUGUC m7a (m7a->m6a) HPSEF_7144_G8592.1_97326956

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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