SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0017685
Gene Symbol: USP6NL
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.11489170A>G COSM368463 LUAD-NYU1051S [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-466 ctcATGTGTATgaac AUACACAU m8a Created HHFKP_16040_cluster-2836_21_11
hsa-miR-4643 ctCATGTGTatgaac GACACAUG m7b (m6b->m7b) HHFKP_16040_cluster-2836_21_11
hsa-miR-539-3p ctcatgTGTATGAac AUCAUACA m7b Created HHFKP_16040_cluster-2836_21_11
hsa-miR-5007-3p ctcatgtATATGAac AUCAUAUG m6b Disrupted HHFKP_16040_cluster-2836_21_11
hsa-miR-485-3p ctcatgTGTATGAac GUCAUACA m7b Created HHFKP_16040_cluster-2836_21_11
hsa-miR-4789-3p ctcATGTGTatgaac CACACAUA m6b Created HHFKP_16040_cluster-2836_21_11
hsa-miR-4717-3p ctCATGTGTatgaac ACACAUGG m7a (m6a->m7a) HHFKP_16040_cluster-2836_21_11
hsa-miR-4666a-5p ctCATGTATatgaac AUACAUGU m7a (m7a->m6a) HHFKP_16040_cluster-2836_21_11

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11489163C>T COSM1345913 TCGA-G4-6588-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6891-3p atatgaATGAGGaag CCCUCAUC m6b Created HHFKP_16040_cluster-2836_21_11
hsa-miR-6758-3p atatGAATGAGgaag ACUCAUUC m7b Created HHFKP_16040_cluster-2836_21_11
hsa-miR-1238-3p atatgaaCGAGGAAg CUUCCUCG m7b Disrupted HHFKP_16040_cluster-2836_21_11
hsa-miR-6072 atatgaATGAGGAag UCCUCAUC m7a Created HHFKP_16040_cluster-2836_21_11
hsa-miR-670-3p atatgaaTGAGGAAg UUUCCUCA m7b Created HHFKP_16040_cluster-2836_21_11

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11485060C>T COSM180866 TCGA-AA-3949-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-142-5p ccCTTTATactaaac CAUAAAGU m6b Created HPCB1_5767_G7143.1_11527063
hsa-miR-340-5p ccCTTTATActaaac UUAUAAAG m7b (m6b->m7b) HPCB1_5767_G7143.1_11527063
hsa-miR-3591-5p ccctttACACTAAAc UUUAGUGU m8a Disrupted HPCB1_5767_G7143.1_11527063
hsa-miR-4280 cccttTACACTaaac GAGUGUAG m6b Disrupted HPCB1_5767_G7143.1_11527063
hsa-miR-5590-3p ccCTTTATactaaac AAUAAAGU m6b Created HPCB1_5767_G7143.1_11527063

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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