SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0017719
Gene Symbol: UPF2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029356A>G COSM4812741 TCGA-CF-A1HR-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-30d-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-30e-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-4328 agAAACTGaaaacta CCAGUUUU m6b Created HPSEF_3183_G3811.1_12071345
hsa-miR-30a-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-30d-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-30e-3p agaaACTGAAAacta CUUUCAGU m7b Created HPSEF_3183_G3811.1_12071345
hsa-miR-4328 agAAACTGaaaacta CCAGUUUU m6b Created HPSEF_3183_G3811.1_12071345

Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029317T>C COSM3686530 TCGA-AM-5821-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2681-3p tgtcCCATGATttta UAUCAUGG m7b Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-3677-3p tgtCCCACGAtttta CUCGUGGG m7b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-4648 tGTCCCACgatttta UGUGGGAC m7b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-6871-5p tgTCCCATGatttta CAUGGGAG m7a (m7a->m6a) HHFKP_16056_cluster-2838_12_16
hsa-miR-2681-3p tgtcCCATGATttta UAUCAUGG m7b Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-3677-3p tgtCCCACGAtttta CUCGUGGG m7b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-4648 tGTCCCACgatttta UGUGGGAC m7b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-6871-5p tgTCCCATGatttta CAUGGGAG m7a (m7a->m6a) HHFKP_16056_cluster-2838_12_16

Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029306G>A COSM1346109 TCGA-AA-3713-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295a tttaatGGCCTAAat UUAGGCCG m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-15a-3p tttaATGGCCTaaat CAGGCCAU m7b Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-370-5p tttaaTGACCTaaat CAGGUCAC m6b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-4529-5p tttaATGGCCTaaat AGGCCAUC m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-4717-5p tttaaTGGCCTAaat UAGGCCAC m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-5704 tttaaTGGCCTAAat UUAGGCCA m8a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-6509-5p tttaatgACCTAAat AUUAGGUA m6b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-1295a tttaatGGCCTAAat UUAGGCCG m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-15a-3p tttaATGGCCTaaat CAGGCCAU m7b Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-370-5p tttaaTGACCTaaat CAGGUCAC m6b Created HHFKP_16056_cluster-2838_12_16
hsa-miR-4529-5p tttaATGGCCTaaat AGGCCAUC m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-4717-5p tttaaTGGCCTAaat UAGGCCAC m7a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-5704 tttaaTGGCCTAAat UUAGGCCA m8a Disrupted HHFKP_16056_cluster-2838_12_16
hsa-miR-6509-5p tttaatgACCTAAat AUUAGGUA m6b Created HHFKP_16056_cluster-2838_12_16

Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029236T>C COSM4012053 TCGA-HU-A4GT-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPCB1_5777_G7155.1_12071238
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPSEF_3182_G3810.1_12071238
hsa-miR-23a-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238
hsa-miR-23b-3p tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238
hsa-miR-23c tctctgATGTGAact AUCACAUU m6b Disrupted HPTK1_4800_G5625.1_12071238

Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029036C>G COSM137981 cSCCP5 [skin][face][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4477b ggtcttTCCTTAATc AUUAAGGA m8a Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-4503 ggtcttTGCTTAAtc UUUAAGCA m7b Created HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-651-3p ggtcTTTCCTTaatc AAAGGAAA m7b Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-6792-5p ggtcttTGCTTAatc GUAAGCAG m6b Created HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701

Mutation Mutation ID Sample Name Cancer Type
chr10:g.12029011AT>T COSM4615402 SW48 [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5692b ctaaaaaATATTATTa AAUAAUAU m8a Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-5692c ctaaaaaATATTATTa AAUAAUAU m8a Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-5692b ctaaaaaATATTATTa AAUAAUAU m8a Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701
hsa-miR-5692c ctaaaaaATATTATTa AAUAAUAU m8a Disrupted HHKTA_45083_NM_080599|976|1015|1.64418175996677|0.341778250802701

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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