SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0017709
Gene Symbol: UPF2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.11964082G>T COSM180972 TCGA-AA-A02Y-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1257 atggCATTCACcctg AGUGAAUG m7b Created HHFKP_16053_cluster-2838_9_10

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11964072G>T COSM361472 LUAD-CHTN-Z4716A [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513c-5p ccctgCTTGAGAcat UUCUCAAG m7b Created HHFKP_16053_cluster-2838_9_10
hsa-miR-514b-5p ccctgCTTGAGAcat UUCUCAAG m7b Created HHFKP_16053_cluster-2838_9_10
hsa-miR-766-3p ccctGCTGGAGacat ACUCCAGC m7b Disrupted HHFKP_16053_cluster-2838_9_10
hsa-miR-4530 ccCTGCTGGagacat CCCAGCAG m7b (m7b->m6b) HHFKP_16053_cluster-2838_9_10
hsa-miR-3925-3p ccctgCTGGAGacat ACUCCAGU m6b Disrupted HHFKP_16053_cluster-2838_9_10

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11964067C>A COSM915282 TCGA-BG-A0VZ-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519e-5p cTGGAGAAatgtgga UUCUCCAA m7a Created HHFKP_16053_cluster-2838_9_10
hsa-miR-515-5p cTGGAGAAatgtgga UUCUCCAA m7a Created HHFKP_16053_cluster-2838_9_10
hsa-miR-629-3p ctGGAGAAatgtgga GUUCUCCC m6b Created HHFKP_16053_cluster-2838_9_10

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11964062G>A COSM1675050 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3618 gacaTGTAGACggtt UGUCUACA m7b Created HHFKP_16053_cluster-2838_9_10

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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