SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0017700
Gene Symbol: UPF2
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955437G>A COSM4012028 TCGA-BR-4363-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5002-5p aattACCAAATggtg AAUUUGGU m7b Created HPTA1_1799_G2469.1_11997434

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955374C>T COSM4595616 NOKSI [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3159 gtTAATCCTgatggc UAGGAUUA m7b (m7b->m6b) HHFCT_16847_cluster-2838_8_24
hsa-miR-3159 gtTAATCCTgatggc UAGGAUUA m7b (m7b->m6b) HPSEF_3177_G3804.1_11997384

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955356C>T COSM3434587 TCGA-D3-A51T-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4471 ccaAGTTCCCtggac UGGGAACU m7b Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-4496 ccaaGTTTCCTggac GAGGAAAC m7b Created HHFCT_16847_cluster-2838_8_24
hsa-miR-4685-5p ccaagttCCCTGGac CCCAGGGC m6b Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-665 ccaagttTCCTGGac ACCAGGAG m6b Created HHFCT_16847_cluster-2838_8_24
hsa-miR-6750-5p ccaaGTTCCCTGgac CAGGGAAC m8a Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-6754-5p ccaagtTCCCTGGac CCAGGGAG m7a Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-6822-5p ccaaGTTCCCTGgac CAGGGAAC m8a Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-6837-5p ccaagttCCCTGGac ACCAGGGC m6b Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-7113-5p ccaagtTCCCTGGAc UCCAGGGA m8a Disrupted HHFCT_16847_cluster-2838_8_24
hsa-miR-8059 ccaAGTTCCCtggac GGGGAACU m7b Disrupted HHFCT_16847_cluster-2838_8_24

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955264C>T COSM915280 TCGA-AX-A0J1-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-335-3p cagtaaATGAAAAct UUUUUCAU m7b Created HHFCT_16846_cluster-2838_7_9
hsa-miR-4729 cagTAAATGAaaact UCAUUUAU m7a Created HHFCT_16846_cluster-2838_7_9
hsa-miR-5696 cagTAAATGAaaact CUCAUUUA m7b Created HHFCT_16846_cluster-2838_7_9
hsa-miR-579-3p cagtAAATGAAaact UUCAUUUG m7a Created HHFCT_16846_cluster-2838_7_9
hsa-miR-664b-3p cagtAAATGAAaact UUCAUUUG m7a Created HHFCT_16846_cluster-2838_7_9
Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955263G>A COSM915279 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.11955246C>T COSM1702059 YUWAND [skin][mucosal][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-300 ttgtttcCTTGTATa UAUACAAG m7b Disrupted HHFCT_16846_cluster-2838_7_9
hsa-miR-381-3p ttgtttcCTTGTATa UAUACAAG m7b Disrupted HHFCT_16846_cluster-2838_7_9
hsa-miR-4261 tTGTTTCCTtgtata AGGAAACA m8a (m8a->m7a) HHFCT_16846_cluster-2838_7_9
hsa-miR-4496 ttGTTTCCTtgtata GAGGAAAC m7b (m7b->m6b) HHFCT_16846_cluster-2838_7_9
hsa-miR-520d-5p ttgtttCTTTGTAta CUACAAAG m7b Created HHFCT_16846_cluster-2838_7_9
hsa-miR-524-5p ttgtttCTTTGTAta CUACAAAG m7b Created HHFCT_16846_cluster-2838_7_9
hsa-miR-624-3p ttgtttCCTTGTata CACAAGGU m6b Disrupted HHFCT_16846_cluster-2838_7_9
hsa-miR-651-3p ttgTTTCCTTgtata AAAGGAAA m7b Disrupted HHFCT_16846_cluster-2838_7_9
hsa-miR-6830-5p ttgtTTCCTTGtata CCAAGGAA m7b Disrupted HHFCT_16846_cluster-2838_7_9

Mutation Mutation ID Sample Name Cancer Type
chr10:g.11936708C>T COSM427130 TCGA-AN-A04C-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3065-5p accacTTTGTTGcta UCAACAAA m7b Created HPTA4_383_G1770.1_11978707
hsa-miR-4795-5p aCCACTTCgttgcta AGAAGUGG m7b Disrupted HPTA4_383_G1770.1_11978707
hsa-miR-520g-3p acCACTTTGTtgcta ACAAAGUG m8a Created HPTA4_383_G1770.1_11978707
hsa-miR-520h acCACTTTGTtgcta ACAAAGUG m8a Created HPTA4_383_G1770.1_11978707
hsa-miR-891a-5p accactTCGTTGCta UGCAACGA m7b Disrupted HPTA4_383_G1770.1_11978707

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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