SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005427
Gene Symbol: TP73
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.3734201G>A COSN10047886 C0004T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4732-3p ggtggcaGTCAGGGa GCCCUGAC m7b Disrupted HPRO6_146_G141.1_3650760
hsa-miR-5002-3p ggtGGCAGTCAggga UGACUGCC m8a Disrupted HPRO6_146_G141.1_3650760

Mutation Mutation ID Sample Name Cancer Type
chr1:g.3727172G>T COSM1196111 H1155 [lung][NS][carcinoma][large_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3189-5p ctgtgtATGGGGCAt UGCCCCAU m8a Created HHHNA_163_TP73|NM_001126240|exon_CDS|-3.43610599627359|0.467100201744019
hsa-miR-4313 ctgtgtAGGGGGCat AGCCCCCU m7b Disrupted HHHNA_163_TP73|NM_001126240|exon_CDS|-3.43610599627359|0.467100201744019
hsa-miR-3189-5p ctgtgtATGGGGCAt UGCCCCAU m8a Created HHHSA_163_TP73|NM_001126240|exon_CDS|-3.43610599627359|0.467100201744019
hsa-miR-4313 ctgtgtAGGGGGCat AGCCCCCU m7b Disrupted HHHSA_163_TP73|NM_001126240|exon_CDS|-3.43610599627359|0.467100201744019

Mutation Mutation ID Sample Name Cancer Type
chr1:g.3723405C>T COSM4856243 TCGA-C5-A2LS-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2276-3p aatctCTTGCAGtat UCUGCAAG m7b Created HPSEF_18_G26.1_3639977
hsa-miR-4418 aatctctTGCAGTat CACUGCAG m6b Created HPSEF_18_G26.1_3639977
hsa-miR-6068 aatctCTCGCAGtat CCUGCGAG m7b Disrupted HPSEF_18_G26.1_3639977
hsa-miR-6807-3p aatctctTGCAGTat CACUGCAU m6b Created HPSEF_18_G26.1_3639977
hsa-miR-2276-3p aatctCTTGCAGtat UCUGCAAG m7b Created HPSEF_18_G26.1_3639977
hsa-miR-4418 aatctctTGCAGTat CACUGCAG m6b Created HPSEF_18_G26.1_3639977
hsa-miR-6068 aatctCTCGCAGtat CCUGCGAG m7b Disrupted HPSEF_18_G26.1_3639977
hsa-miR-6807-3p aatctctTGCAGTat CACUGCAU m6b Created HPSEF_18_G26.1_3639977

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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