SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0060377
Gene Symbol: TOP1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.41092565G>T COSM1026784 TCGA-D1-A17Q-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3126-3p ttCCAGATaatgtca CAUCUGGC m6b Created HHFCT_96422_cluster-14405_5_25
hsa-miR-3191-5p ttCCAGAGAatgtca CUCUCUGG m7b (m7b->m6b) HHFCT_96422_cluster-14405_5_25
hsa-miR-326 ttCCAGAGaatgtca CCUCUGGG m6b Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-330-5p ttCCAGAGAatgtca UCUCUGGG m7a (m7a->m6a) HHFCT_96422_cluster-14405_5_25
hsa-miR-4262 ttccagaGAATGTCa GACAUUCA m7a Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-518c-5p tTCCAGAGAatgtca UCUCUGGA m8a (m8a->m7a) HHFCT_96422_cluster-14405_5_25
hsa-miR-6764-3p ttCCAGAGAatgtca UCUCUGGU m7a (m7a->m6a) HHFCT_96422_cluster-14405_5_25
hsa-miR-6824-3p ttCCAGAGAatgtca UCUCUGGU m7a (m7a->m6a) HHFCT_96422_cluster-14405_5_25
hsa-miR-1298-3p ttCCAGATaatgtca CAUCUGGG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-3126-3p ttCCAGATaatgtca CAUCUGGC m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-3191-5p ttCCAGAGAatgtca CUCUCUGG m7b (m7b->m6b) HHFKP_89625_cluster-14405_8_389
hsa-miR-326 ttCCAGAGaatgtca CCUCUGGG m6b Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-330-5p ttCCAGAGAatgtca UCUCUGGG m7a (m7a->m6a) HHFKP_89625_cluster-14405_8_389
hsa-miR-4262 ttccagaGAATGTCa GACAUUCA m7a Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-518c-5p tTCCAGAGAatgtca UCUCUGGA m8a (m8a->m7a) HHFKP_89625_cluster-14405_8_389
hsa-miR-6764-3p ttCCAGAGAatgtca UCUCUGGU m7a (m7a->m6a) HHFKP_89625_cluster-14405_8_389
hsa-miR-6824-3p ttCCAGAGAatgtca UCUCUGGU m7a (m7a->m6a) HHFKP_89625_cluster-14405_8_389

Mutation Mutation ID Sample Name Cancer Type
chr20:g.41092541C>A COSM1411781 TCGA-F4-6570-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-19a-3p taTTTGCACcaccat UGUGCAAA m7b (m6b->m7b) HHFCT_96422_cluster-14405_5_25
hsa-miR-19b-3p taTTTGCACcaccat UGUGCAAA m7b (m6b->m7b) HHFCT_96422_cluster-14405_5_25
hsa-miR-3151-5p tatttGCCCCACCat GGUGGGGC m8a Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-323a-5p tatttgcACCACCat AGGUGGUC m6b Created HHFCT_96422_cluster-14405_5_25
hsa-miR-4447 tatttgCCCCACCat GGUGGGGG m7a Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-4472 tatttgCCCCACCat GGUGGGGG m7a Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-486-3p tattTGCCCCaccat CGGGGCAG m6b Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-6769a-5p tatttgcCCCACCat AGGUGGGU m6b Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-92a-2-5p tatttgCCCCACCat GGGUGGGG m7b Disrupted HHFCT_96422_cluster-14405_5_25
hsa-miR-19a-3p taTTTGCACcaccat UGUGCAAA m7b (m6b->m7b) HHFKP_89625_cluster-14405_8_389
hsa-miR-19b-3p taTTTGCACcaccat UGUGCAAA m7b (m6b->m7b) HHFKP_89625_cluster-14405_8_389
hsa-miR-3151-5p tatttGCCCCACCat GGUGGGGC m8a Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-323a-5p tatttgcACCACCat AGGUGGUC m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-4447 tatttgCCCCACCat GGUGGGGG m7a Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-4472 tatttgCCCCACCat GGUGGGGG m7a Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-486-3p tattTGCCCCaccat CGGGGCAG m6b Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-6769a-5p tatttgcCCCACCat AGGUGGGU m6b Disrupted HHFKP_89625_cluster-14405_8_389
hsa-miR-92a-2-5p tatttgCCCCACCat GGGUGGGG m7b Disrupted HHFKP_89625_cluster-14405_8_389

Mutation Mutation ID Sample Name Cancer Type
chr20:g.41092518G>C COSM1578191 1946219 [lung][NS][carcinoma][non_small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-135b-3p attCCTACAacataa AUGUAGGG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-4781-3p attcctaCAACATaa AAUGUUGG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-8065 aTTCCTACAacataa UGUAGGAA m8a (m7a->m8a) HHFKP_89625_cluster-14405_8_389

Mutation Mutation ID Sample Name Cancer Type
chr20:g.41092514C>T COSM4504142 CSCC-60-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513a-3p gGAAATTTctagaac UAAAUUUC m7b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-513c-3p gGAAATTTctagaac UAAAUUUC m7b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-518d-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-518e-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-518f-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-519a-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-519b-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-519c-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-520c-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-522-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-523-5p ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-526a ggaaattTCTAGAac CUCUAGAG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-5680 ggaaATTTCTagaac GAGAAAUG m6b Created HHFKP_89625_cluster-14405_8_389
hsa-miR-6508-5p ggaaaTTTCTAGAac UCUAGAAA m8a Created HHFKP_89625_cluster-14405_8_389
hsa-miR-8067 ggaaaTTTCTAGaac CCUAGAAA m7b Created HHFKP_89625_cluster-14405_8_389

Mutation Mutation ID Sample Name Cancer Type
chr20:g.41084502A>C COSM187489 TCGA-AA-3864-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3149 aaagATACAAAagtt UUUGUAUG m7a Created HHFCT_96421_cluster-14405_4_10

Mutation Mutation ID Sample Name Cancer Type
chr20:g.41084499A>C COSM3291315 HT55 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-208a-5p gatAAAGCTaaaaaa GAGCUUUU m6b Created HHFCT_96421_cluster-14405_4_10
hsa-miR-208b-5p gatAAAGCTaaaaaa AAGCUUUU m6b Created HHFCT_96421_cluster-14405_4_10
hsa-miR-5579-3p gataAAGCTAAaaaa UUAGCUUA m7a Created HHFCT_96421_cluster-14405_4_10

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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