SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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Transcript ID: | NM_003286 |
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Gene Symbol: | TOP1 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41081221G>T | COSM1026783 | TCGA-D1-A16X-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-627-3p | aAGAAAAGAaaacta | UCUUUUCU | m8a | (m8a->m7a) | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41081216G>T | COSM3423644 | TCGA-F5-6814-01 | [large_intestine][rectum][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-4659a-3p | aggAGAAGAAAagaa | UUUCUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-4659b-3p | aggAGAAGAAAagaa | UUUCUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-627-3p | aggagaAGAAAAGAa | UCUUUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-6875-3p | aggaGAAGAAaagaa | AUUCUUCC | m6b | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-942-5p | agGAGAAGAaaagaa | UCUUCUCU | m7a | (m7a->m6a) | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41081216G>A | COSM4735303 | T3145 | [large_intestine][colon][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-4659a-3p | aggAGAAGAAAagaa | UUUCUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-4659b-3p | aggAGAAGAAAagaa | UUUCUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-627-3p | aggagaAGAAAAGAa | UCUUUUCU | m8a | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-6875-3p | aggaGAAGAAaagaa | AUUCUUCC | m6b | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-942-5p | agGAGAAGAaaagaa | UCUUCUCU | m7a | (m7a->m6a) | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41081197A>C | COSM1734451 | ACINAR20 | [pancreas][NS][carcinoma][acinar_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-141-5p | aaaacaGAAGATacc | CAUCUUCC | m6b | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-3182 | aaaACAGAAGatacc | GCUUCUGU | m7b | Disrupted | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-3692-5p | aaaaCAGCAGatacc | CCUGCUGG | m6b | Created | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-4652-3p | aaAACAGAAgatacc | GUUCUGUU | m7b | (m7b->m6b) | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-4686 | aaaacAGCAGATAcc | UAUCUGCU | m8a | Created | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-6071 | aaaaCAGCAGAtacc | UUCUGCUG | m7b | Created | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-6828-3p | aaaacAGCAGATacc | AUCUGCUC | m7a | Created | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
hsa-miR-93-3p | aaaaCAGCAGatacc | ACUGCUGA | m6b | Created | HHKTA_44982_NM_003286|711|750|1.64418175996677|1.978688146187 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41076198C>G | COSM723681 | TCGA-66-2773-01 | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-130b-5p | agaaacaGAAAGAGa | ACUCUUUC | m7b | Created | HPSEF_13782_G16590.1_39704835 |
hsa-miR-4652-3p | agaAACAGAAagaga | GUUCUGUU | m7b | Created | HPSEF_13782_G16590.1_39704835 |
hsa-miR-5010-3p | agaaACACAAAgaga | UUUUGUGU | m7b | Disrupted | HPSEF_13782_G16590.1_39704835 |
hsa-miR-599 | agaaACACAAagaga | GUUGUGUC | m6b | Disrupted | HPSEF_13782_G16590.1_39704835 |
hsa-miR-6844 | agaaacACAAAGAga | UUCUUUGU | m7b | Disrupted | HPSEF_13782_G16590.1_39704835 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41076173A>G | COSM723682 | TCGA-60-2723-01 | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-1273g-3p | taCAGTGGacataaa | ACCACUGC | m6b | Created | HPSEF_13782_G16590.1_39704835 |
hsa-miR-3912-5p | tacagTGGACATaaa | AUGUCCAU | m7a | Created | HPSEF_13782_G16590.1_39704835 |
hsa-miR-4436b-5p | tacAGTGGACataaa | GUCCACUU | m7a | Created | HPSEF_13782_G16590.1_39704835 |
hsa-miR-6509-3p | taCAGTGGAcataaa | UUCCACUG | m7b | (m6b->m7b) | HPSEF_13782_G16590.1_39704835 |
hsa-miR-6834-3p | tacagtGGACATAaa | UAUGUCCC | m7a | Created | HPSEF_13782_G16590.1_39704835 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41061435C>T | COSM4753301 | pfg127T | [stomach][NS][carcinoma][intestinal_adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-1202 | agaacaCTGGCACaa | GUGCCAGC | m7a | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-1227-3p | agaacacTGGCACaa | CGUGCCAC | m6b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-199a-5p | agaACACTGGcacaa | CCCAGUGU | m7b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-199b-5p | agaACACTGGcacaa | CCCAGUGU | m7b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-4255 | aGAACACTGgcacaa | CAGUGUUC | m8a | (m7a->m8a) | HHFKP_89622_cluster-14405_5_232 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41061426C>A | COSM187471 | TCGA-AA-A022-01 | [large_intestine][caecum][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-2117 | caaagatAGAGAACa | UGUUCUCU | m7b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-4684-5p | caaagaTAGAGAaca | CUCUCUAC | m6b | Created | HHFKP_89622_cluster-14405_5_232 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41061411G>T | COSM1026781 | TCGA-AP-A056-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-2113 | aCACAAATataaaca | AUUUGUGC | m7a | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-6083 | acacaaATATAAaca | CUUAUAUC | m6b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-6844 | acACAAAGAtaaaca | UUCUUUGU | m7b | (m7b->m6b) | HHFKP_89622_cluster-14405_5_232 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr20:g.41061410A>G | COSM3939348 | ESCC-123T | [oesophagus][NS][carcinoma][NS] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-362-5p | aacaCAAGGATaaac | AAUCCUUG | m7b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-500b-5p | aacaCAAGGATaaac | AAUCCUUG | m7b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-5010-3p | aACACAAAgataaac | UUUUGUGU | m7b | Disrupted | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-501-5p | aacacAAGGATaaac | AAUCCUUU | m6b | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-502-5p | aacaCAAGGATaaac | AUCCUUGC | m7a | Created | HHFKP_89622_cluster-14405_5_232 |
hsa-miR-6844 | aacACAAAGAtaaac | UUCUUUGU | m7b | Disrupted | HHFKP_89622_cluster-14405_5_232 |