SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005486
Gene Symbol: TOM1L1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.54911482C>T COSN15144886 PD4116a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-3p aAAATATCTaaattt AGAUAUUU m8a (m8a->m7a) HHFKP_64154_cluster-9722_2_191
hsa-miR-32-3p aaaatatCTAAATTt CAAUUUAG m7b Disrupted HHFKP_64154_cluster-9722_2_191
hsa-miR-8061 aaaatATCTAAattt CUUAGAUU m6b Disrupted HHFKP_64154_cluster-9722_2_191

Mutation Mutation ID Sample Name Cancer Type
chr17:g.54903763C>T COSM3519695 TCGA-D3-A3CF-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4719 tgcacATTTGTGAca UCACAAAU m8a Created HHFCT_67923_cluster-9722_2_8
hsa-miR-5683 tgcaCATCTGTgaca UACAGAUG m7b Disrupted HHFCT_67923_cluster-9722_2_8
hsa-miR-576-3p tgCACATCTgtgaca AAGAUGUG m7b (m7b->m6b) HHFCT_67923_cluster-9722_2_8
hsa-miR-4719 tgcacATTTGTGAca UCACAAAU m8a Created HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305
hsa-miR-5683 tgcaCATCTGTgaca UACAGAUG m7b Disrupted HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305
hsa-miR-576-3p tgCACATCTgtgaca AAGAUGUG m7b (m7b->m6b) HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305

Mutation Mutation ID Sample Name Cancer Type
chr17:g.54903763C>A COSM1303070 TCGA-FD-A3B7-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5580-3p tgcaCATATGTGaca CACAUAUG m8a Created HHFCT_67923_cluster-9722_2_8
hsa-miR-5683 tgcaCATCTGTgaca UACAGAUG m7b Disrupted HHFCT_67923_cluster-9722_2_8
hsa-miR-576-3p tgCACATCTgtgaca AAGAUGUG m7b (m7b->m6b) HHFCT_67923_cluster-9722_2_8
hsa-miR-5580-3p tgcaCATATGTGaca CACAUAUG m8a Created HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305
hsa-miR-5683 tgcaCATCTGTgaca UACAGAUG m7b Disrupted HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305
hsa-miR-576-3p tgCACATCTgtgaca AAGAUGUG m7b (m7b->m6b) HHKTA_18957_NM_005486|278|317|3.80757881255463|0.884632800832305

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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