SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001307975
Gene Symbol: TMPO
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.98549640A>C COSN1595818 RK046_C02 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-584-5p gtcattgACCATAAa UUAUGGUU m7a Disrupted HHFCT_38677_cluster-5118_26_55
hsa-miR-3115 gtcattgCCCATAaa AUAUGGGU m6b Created HHFKP_37344_cluster-5118_40_34
hsa-miR-5587-5p gtcatTGACCATaaa AUGGUCAC m7a Disrupted HHFCT_38677_cluster-5118_26_55
hsa-miR-5587-5p gtcatTGACCATaaa AUGGUCAC m7a Disrupted HHFKP_37344_cluster-5118_40_34
hsa-miR-584-5p gtcattgACCATAAa UUAUGGUU m7a Disrupted HHFKP_37344_cluster-5118_40_34
hsa-miR-3115 gtcattgCCCATAaa AUAUGGGU m6b Created HHFCT_38677_cluster-5118_26_55

Mutation Mutation ID Sample Name Cancer Type
chr12:g.98543222A>G COSN4899629 CPCG_0099_Pr_P_F0 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-16-2-3p aggttaAATATTGGc CCAAUAUU m8a Disrupted HHFKP_37328_cluster-5118_21_256
hsa-miR-195-3p aggttaAATATTGGc CCAAUAUU m8a Disrupted HHFKP_37328_cluster-5118_21_256
hsa-miR-323b-3p aggttaaGTATTGGc CCCAAUAC m7b Created HHFKP_37328_cluster-5118_21_256

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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