SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_006342
Gene Symbol: TACC3
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.1745165AT>A COSN1291877 HCC81T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-488-3p CCTTTCAAtttaaaca UUGAAAGG m8a Disrupted HHFKP_108884_cluster-16994_10_102
hsa-miR-488-3p CCTTTCAAtttaaaca UUGAAAGG m8a Disrupted HHKTA_24745_AF093543|2741|2780|2.98548793257124|2.35620318755662

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1744981G>A COSM420113 TCGA-BT-A20P-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1181 gatctGCGACGacct CCGUCGCC m6b Disrupted HHHNE_18454_TACC3|NM_006342|exon_CDS|-5.14863988087818|0.356474963950506
hsa-miR-1273h-3p gaTCTGCAacgacct CUGCAGAC m6b Created HHHNE_18454_TACC3|NM_006342|exon_CDS|-5.14863988087818|0.356474963950506
hsa-miR-1181 gatctGCGACGacct CCGUCGCC m6b Disrupted HHHSE_18454_TACC3|NM_006342|exon_CDS|-5.14863988087818|0.356474963950506
hsa-miR-1273h-3p gaTCTGCAacgacct CUGCAGAC m6b Created HHHSE_18454_TACC3|NM_006342|exon_CDS|-5.14863988087818|0.356474963950506

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1744532G>A COSM1309905 TCGA-DK-A1AC-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3606-5p agTCACTAAagaagt UUAGUGAA m7a (m6a->m7a) HHFKP_108882_cluster-16994_8_64
hsa-miR-4276 agTCACTGAagaagt CUCAGUGA m7b (m7b->m6b) HHFKP_108882_cluster-16994_8_64
hsa-miR-4778-3p agtcactGAAGAAGt UCUUCUUC m7b Disrupted HHFKP_108882_cluster-16994_8_64
hsa-miR-5190 aGTCACTGaagaagt CCAGUGAC m7b Disrupted HHFKP_108882_cluster-16994_8_64

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1740913C>T COSM4731888 T2269 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-490-5p ctgaacTCCATGGag CCAUGGAU m7a Disrupted HHFCT_117688_cluster-16994_7_17
hsa-miR-6514-5p ctgaACTCCATggag UAUGGAGU m7b Disrupted HHFCT_117688_cluster-16994_7_17
hsa-miR-8060 ctgaaCTTCATGGag CCAUGAAG m8a Created HHFCT_117688_cluster-16994_7_17

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1740876C>T COSM3602054 TCGA-FS-A1ZC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548a-3p gaaAGTTTTaaaaga CAAAACUG m6b Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-548ar-3p gaaAGTTTTAaaaga UAAAACUG m7a Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-548az-3p gaaAGTTTTaaaaga AAAAACUG m6b Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-548e-3p gaaAGTTTTaaaaga AAAAACUG m6b Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-548f-3p gaaAGTTTTaaaaga AAAAACUG m6b Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-5582-3p gaAAGTTTTAaaaga UAAAACUU m8a Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-5687 gaaaGTTCTAAaaga UUAGAACG m7a Disrupted HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662

Mutation Mutation ID Sample Name Cancer Type
chr4:g.1740861G>T COSM1485839 TCGA-AC-A23C-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-205-3p caaagCTGAAATCca GAUUUCAG m8a Disrupted HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-208b-5p cAAAGCTTaaatcca AAGCUUUU m7a Created HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-3167 caaagctGAAATCCa AGGAUUUC m7b Disrupted HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662
hsa-miR-876-5p caaagctGAAATCCa UGGAUUUC m7b Disrupted HHKTA_21008_AF093543|2207|2246|3.46143528414057|2.35620318755662

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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