SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_016930
Gene Symbol: STX18
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.4531606C>T COSN9042228 AOCS-086-3-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29b-1-5p AAACCAGCgtaacaa GCUGGUUU m8a Disrupted HHFCT_113791_uc003gic.1_25_8
hsa-miR-6757-3p aaaCCAGTGTaacaa AACACUGG m7b Created HHFCT_113791_uc003gic.1_25_8
hsa-miR-29b-1-5p AAACCAGCgtaacaa GCUGGUUU m8a Disrupted HHFCT_113791_uc003gic.1_25_8
hsa-miR-6757-3p aaaCCAGTGTaacaa AACACUGG m7b Created HHFCT_113791_uc003gic.1_25_8

Mutation Mutation ID Sample Name Cancer Type
chr4:g.4494630G>T COSN2030700 RK177_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2116-5p aggggAAGAACaagg GGUUCUUA m6b Disrupted HHFCT_113781_uc003gic.1_15_7
hsa-miR-22-5p agggGAAGAACaagg AGUUCUUC m7b Disrupted HHFCT_113781_uc003gic.1_15_7
hsa-miR-3938 agGGGAATaacaagg AAUUCCCU m6b Created HHFCT_113781_uc003gic.1_15_7
hsa-miR-4273 aggggaAGAACAagg GUGUUCUC m6b Disrupted HHFCT_113781_uc003gic.1_15_7
hsa-miR-4677-5p aggggAAGAACAAgg UUGUUCUU m8a Disrupted HHFCT_113781_uc003gic.1_15_7
hsa-miR-6739-3p aggggaAGAACAAgg AUUGUUCU m7b Disrupted HHFCT_113781_uc003gic.1_15_7
hsa-miR-6875-3p aggGGAAGAAcaagg AUUCUUCC m7b Disrupted HHFCT_113781_uc003gic.1_15_7
Mutation Mutation ID Sample Name Cancer Type
chr4:g.4457434A>T COSM3775858 TCGA-FJ-A3ZE-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr4:g.4457422G>T COSM356154 LUAD-B01970 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4775 ttgAAAATTAtttca UUAAUUUU m7b Created HHFCT_113776_uc003gic.1_10_18
hsa-miR-5003-3p ttGAAAAGTAtttca UACUUUUC m8a Disrupted HHFCT_113776_uc003gic.1_10_18
hsa-miR-5692a ttgaaaATTATTTca CAAAUAAU m7b Created HHFCT_113776_uc003gic.1_10_18
hsa-miR-4775 ttgAAAATTAtttca UUAAUUUU m7b Created HHFKP_105865_uc003gic.1_7_16
hsa-miR-5003-3p ttGAAAAGTAtttca UACUUUUC m8a Disrupted HHFKP_105865_uc003gic.1_7_16
hsa-miR-5692a ttgaaaATTATTTca CAAAUAAU m7b Created HHFKP_105865_uc003gic.1_7_16

Mutation Mutation ID Sample Name Cancer Type
chr4:g.4438431A>G COSM4124840 TCGA-HU-A4GU-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5007-5p cttcaaaAGACTCTg UAGAGUCU m7b Disrupted HHKTA_28525_NM_016930|654|693|2.59607646310543|0.634359867507186
hsa-miR-924 cttcaaAAGACTCTg AGAGUCUU m8a Disrupted HHKTA_28525_NM_016930|654|693|2.59607646310543|0.634359867507186

Mutation Mutation ID Sample Name Cancer Type
chr4:g.4420104G>A COSM1429834 TCGA-G4-6586-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3186-3p ggcttCCGCGTGtgg UCACGCGG m7b Disrupted HHFKP_105862_uc003gic.1_4_8
hsa-miR-3190-3p ggCTTCCACgtgtgg UGUGGAAG m7b (m6b->m7b) HHFKP_105862_uc003gic.1_4_8
hsa-miR-6079 gGCTTCCAcgtgtgg UUGGAAGC m7b Created HHFKP_105862_uc003gic.1_4_8

Mutation Mutation ID Sample Name Cancer Type
chr4:g.4420096A>G COSM2848211 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1180-5p cgtGTGGGTCCtctt GGACCCAC m8a Created HHFKP_105862_uc003gic.1_4_8
hsa-miR-4661-3p cgtgtGGATCCTctt CAGGAUCC m7b Disrupted HHFKP_105862_uc003gic.1_4_8
hsa-miR-4751 cgtgtgGGTCCTCTt AGAGGACC m8a Created HHFKP_105862_uc003gic.1_4_8
hsa-miR-711 cgtgTGGGTCCtctt GGGACCCA m7b Created HHFKP_105862_uc003gic.1_4_8
hsa-miR-7114-3p cgtGTGGGTCctctt UGACCCAC m7b Created HHFKP_105862_uc003gic.1_4_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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