SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0051615
Gene Symbol: STRN4
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.46723244C>T COSM4638245 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-324-5p acgGGGATGCcgtgt CGCAUCCC m7b Created HHFKP_70964_uc002pfl.1_7_213
hsa-miR-6729-3p acGGGGATGccgtgt UCAUCCCC m7b (m6b->m7b) HHFKP_70964_uc002pfl.1_7_213
hsa-miR-324-5p acgGGGATGCcgtgt CGCAUCCC m7b Created HHFKP_70964_uc002pfl.1_7_213
hsa-miR-6729-3p acGGGGATGccgtgt UCAUCCCC m7b (m6b->m7b) HHFKP_70964_uc002pfl.1_7_213

Mutation Mutation ID Sample Name Cancer Type
chr19:g.46723147AGCC>C COSM4730690 T3254 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6762-3p cagcAGCAGCCcggcctg UGGCUGCU m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-6829-5p cagcaGCAGCCCggcctg UGGGCUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-6762-3p cagcAGCAGCCcggcctg UGGCUGCU m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-6829-5p cagcaGCAGCCCggcctg UGGGCUGC m7b Disrupted HPRO6_41764_G49231.1_47226392

Mutation Mutation ID Sample Name Cancer Type
chr19:g.46723136C>G COSM4976448 1N49-VS-1T49 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p cctgCCTCTGCacct AGCAGAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-3678-3p cctgcCTCTGCAcct CUGCAGAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4514 cCTGCCTGTgcacct ACAGGCAG m8a (m7a->m8a) HPRO6_41764_G49231.1_47226392
hsa-miR-4692 cCTGCCTGtgcacct UCAGGCAG m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6893-5p CCTGCCTGtgcacct CAGGCAGG m8a Created HPRO6_41764_G49231.1_47226392
hsa-miR-1827 cCTGCCTCtgcacct UGAGGCAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-2467-3p cctgCCTCTGCacct AGCAGAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-3678-3p cctgcCTCTGCAcct CUGCAGAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4514 cCTGCCTGTgcacct ACAGGCAG m8a (m7a->m8a) HPRO6_41764_G49231.1_47226392
hsa-miR-4692 cCTGCCTGtgcacct UCAGGCAG m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6893-5p CCTGCCTGtgcacct CAGGCAGG m8a Created HPRO6_41764_G49231.1_47226392

Mutation Mutation ID Sample Name Cancer Type
chr19:g.46723130C>A COSM3422940 TCGA-EI-6882-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-3p tctgcACATTCCcca UGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-18a-5p tctGCACCTTcccca UAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-18b-5p tctGCACCTTcccca UAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-206 tctgcACATTCCcca UGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-4271 tctgcacCTTCCCCa GGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4725-3p tctgcacCTTCCCCa UGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4735-3p tctGCACCTTcccca AAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4747-5p tctgcaCCTTCCCca AGGGAAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-5196-5p tctgcaCCTTCCCca AGGGAAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-613 tctgcACATTCCcca AGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6716-5p tctgcaCATTCCCca UGGGAAUG m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6780b-5p tctgcacCTTCCCCa UGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-1-3p tctgcACATTCCcca UGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-18a-5p tctGCACCTTcccca UAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-18b-5p tctGCACCTTcccca UAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-206 tctgcACATTCCcca UGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-4271 tctgcacCTTCCCCa GGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4725-3p tctgcacCTTCCCCa UGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4735-3p tctGCACCTTcccca AAAGGUGC m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-4747-5p tctgcaCCTTCCCca AGGGAAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-5196-5p tctgcaCCTTCCCca AGGGAAGG m7b Disrupted HPRO6_41764_G49231.1_47226392
hsa-miR-613 tctgcACATTCCcca AGGAAUGU m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6716-5p tctgcaCATTCCCca UGGGAAUG m7b Created HPRO6_41764_G49231.1_47226392
hsa-miR-6780b-5p tctgcacCTTCCCCa UGGGGAAG m7b Disrupted HPRO6_41764_G49231.1_47226392

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser