SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001039877
Gene Symbol: STRN4
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.46722012C>A COSM4730687 T3503 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3170 gtggACCCCAacggc CUGGGGUU m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-5572 gtggACCCCAACggc GUUGGGGU m8a Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-615-5p gtGGACCCCaacggc GGGGGUCC m7b (m7b->m6b) HPRO6_41763_G49230.1_47225269
hsa-miR-6812-5p gtggACCCCAacggc AUGGGGUG m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-7704 gtgGACCCCaacggc CGGGGUCG m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-3170 gtggACCCCAacggc CUGGGGUU m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-5572 gtggACCCCAACggc GUUGGGGU m8a Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-615-5p gtGGACCCCaacggc GGGGGUCC m7b (m7b->m6b) HPRO6_41763_G49230.1_47225269
hsa-miR-6812-5p gtggACCCCAacggc AUGGGGUG m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-7704 gtgGACCCCaacggc CGGGGUCG m6b Disrupted HPRO6_41763_G49230.1_47225269

Mutation Mutation ID Sample Name Cancer Type
chr19:g.46722004G>A COSM4079605 TCGA-BR-4184-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-3p caacggcACATTCCt UGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-206 caacggcACATTCCt UGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-3195 caaCGGCGCattcct CGCGCCGG m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-455-5p caacGGCACATtcct UAUGUGCC m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-4787-3p caacGGCGCATtcct GAUGCGCC m7b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-613 caacggcACATTCCt AGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-1-3p caacggcACATTCCt UGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-206 caacggcACATTCCt UGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-3195 caaCGGCGCattcct CGCGCCGG m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-455-5p caacGGCACATtcct UAUGUGCC m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-4787-3p caacGGCGCATtcct GAUGCGCC m7b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-613 caacggcACATTCCt AGGAAUGU m7b Created HPRO6_41763_G49230.1_47225269

Mutation Mutation ID Sample Name Cancer Type
chr19:g.46721999C>T COSM3536197 TCGA-GN-A26C-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-3p gcgcatTTCTGATGt CAUCAGAA m8a Created HPRO6_41763_G49230.1_47225269
hsa-miR-5680 gcgCATTTCTgatgt GAGAAAUG m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-873-5p gcgcaTTCCTGatgt GCAGGAAC m6b Disrupted HPRO6_41763_G49230.1_47225269
hsa-miR-2115-3p gcgcatTTCTGATGt CAUCAGAA m8a Created HPRO6_41763_G49230.1_47225269
hsa-miR-5680 gcgCATTTCTgatgt GAGAAAUG m7b Created HPRO6_41763_G49230.1_47225269
hsa-miR-873-5p gcgcaTTCCTGatgt GCAGGAAC m6b Disrupted HPRO6_41763_G49230.1_47225269

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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