SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_030965
Gene Symbol: ST6GALNAC5
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.77063181A>C COSM4401790 TCGA-D9-A6EC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4433a-3p ataaatcCTCCTGag ACAGGAGU m6b Created HPCB1_671_G883.1_77528861
hsa-miR-1265 ataaatCATCCTGag CAGGAUGU m7a Disrupted HPCB1_671_G883.1_77528861
hsa-miR-6894-5p ataaATCCTCCTgag AGGAGGAU m8a Created HPCB1_671_G883.1_77528861
hsa-miR-4768-3p ataaatcCTCCTGag CCAGGAGA m6b Created HPCB1_671_G883.1_77528861
hsa-miR-4695-5p ataaatCCTCCTGag CAGGAGGC m7a Created HPCB1_671_G883.1_77528861
hsa-miR-4459 ataaatCCTCCTGag CCAGGAGG m7b Created HPCB1_671_G883.1_77528861

Mutation Mutation ID Sample Name Cancer Type
chr1:g.77063162G>A COSM3492450 TCGA-EE-A2GI-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29b-1-5p gAAACCAGaatcact GCUGGUUU m7b Disrupted HPCB1_671_G883.1_77528861
hsa-miR-29b-2-5p GAAACCAGaatcact CUGGUUUC m8a Disrupted HPCB1_671_G883.1_77528861
hsa-miR-659-3p gaAACCAAaatcact CUUGGUUC m6b Created HPCB1_671_G883.1_77528861

Mutation Mutation ID Sample Name Cancer Type
chr1:g.77044134A>G COSN1457978 RK016_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-562 gcagGCTACTTccct AAAGUAGC m7b Disrupted HPSEF_1646_G1966.1_77509825
hsa-miR-6828-5p gcaggcTGCTTCCct AGGAAGCA m7b Created HPSEF_1646_G1966.1_77509825

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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