SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018327
Gene Symbol: SPTLC3
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.13165527A>G COSN14599332 8049223 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548a-3p ctcctaCAGTTTTac CAAAACUG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548ar-3p ctcctaCAGTTTTAc UAAAACUG m8a Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548ap-3p ctcctacGGTTTTac AAAAACCA m6b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-548aa ctcctacGGTTTTac AAAAACCA m6b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-1537-3p ctcctACGGTTTTac AAAACCGU m8a Created HHFCT_95611_cluster-14278_4_8
hsa-miR-1183 ctcCTACAGTtttac CACUGUAG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548at-3p ctcctaCGGTTTTac CAAAACCG m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-548t-3p ctcctacGGTTTTac AAAAACCA m6b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-548g-3p ctcctACAGTTTTac AAAACUGU m8a Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548f-3p ctcctaCAGTTTTac AAAAACUG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548e-3p ctcctaCAGTTTTac AAAAACUG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548az-3p ctcctaCAGTTTTac AAAAACUG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-548ay-3p ctcctaCGGTTTTac CAAAACCG m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-548av-3p ctcctaCAGTTTTac AAAACUGC m7a Disrupted HHFCT_95611_cluster-14278_4_8

Mutation Mutation ID Sample Name Cancer Type
chr20:g.13165507T>C COSN9395679 AOCS-084-1-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3916 ttccttTTCCTCTTg AAGAGGAA m8a Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-3153 ttcCTTTCCCtcttg GGGGAAAG m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-3125 ttccttTTCCTCTtg UAGAGGAA m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-6739-5p ttcCTTTCCCtcttg UGGGAAAG m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-6873-5p ttccttTCCCTCTtg CAGAGGGA m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-6859-5p ttccttTTCCTCTtg GAGAGGAA m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-6733-5p ttcCTTTCCCtcttg UGGGAAAG m7b Created HHFCT_95611_cluster-14278_4_8
hsa-miR-6124 ttcCTTTTCCtcttg GGGAAAAG m7b Disrupted HHFCT_95611_cluster-14278_4_8
hsa-miR-5584-5p ttccTTTCCCTcttg CAGGGAAA m7b Created HHFCT_95611_cluster-14278_4_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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