SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_003615
Gene Symbol: SLC4A7
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.27376615C>G COSN1275459 HCC115T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-5p tgAGCACCGTggaga ACGGUGCU m8a Disrupted HHFCT_103269_cluster-16438_40_35
hsa-miR-3907 tGAGCACCgtggaga AGGUGCUC m7b Disrupted HHFCT_103269_cluster-16438_40_35
hsa-miR-1250-5p tgAGCACCGTggaga ACGGUGCU m8a Disrupted HHFKP_95976_cluster-16438_39_220
hsa-miR-3907 tGAGCACCgtggaga AGGUGCUC m7b Disrupted HHFKP_95976_cluster-16438_39_220
hsa-miR-1250-5p tgAGCACCGTggaga ACGGUGCU m8a Disrupted HHFCT_103269_cluster-16438_40_35
hsa-miR-3907 tGAGCACCgtggaga AGGUGCUC m7b Disrupted HHFCT_103269_cluster-16438_40_35
hsa-miR-1250-5p tgAGCACCGTggaga ACGGUGCU m8a Disrupted HHFKP_95976_cluster-16438_39_220
hsa-miR-3907 tGAGCACCgtggaga AGGUGCUC m7b Disrupted HHFKP_95976_cluster-16438_39_220
Mutation Mutation ID Sample Name Cancer Type
chr3:g.27376240G>A COSN6764223 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.27374120A>T COSN6764222 RK216_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3133 gaaatGTTCTTTttt UAAAGAAC m7b Created HHFCT_103249_cluster-16438_10_482
hsa-miR-548av-5p gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHFCT_103249_cluster-16438_10_482
hsa-miR-548k gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHFCT_103249_cluster-16438_10_482
hsa-miR-548n gaaatgTACTTTTtt CAAAAGUA m7b Disrupted HHFCT_103249_cluster-16438_10_482
hsa-miR-8054 gaaatGTACTTTttt GAAAGUAC m7b Disrupted HHFCT_103249_cluster-16438_10_482
hsa-miR-3133 gaaatGTTCTTTttt UAAAGAAC m7b Created HHFKP_95953_cluster-16438_14_357
hsa-miR-548av-5p gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHFKP_95953_cluster-16438_14_357
hsa-miR-548k gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHFKP_95953_cluster-16438_14_357
hsa-miR-548n gaaatgTACTTTTtt CAAAAGUA m7b Disrupted HHFKP_95953_cluster-16438_14_357
hsa-miR-8054 gaaatGTACTTTttt GAAAGUAC m7b Disrupted HHFKP_95953_cluster-16438_14_357
hsa-miR-3133 gaaatGTTCTTTttt UAAAGAAC m7b Created HHSJI_1861_Peak44803|16|0.2333|4|EU499349|SLC4A7
hsa-miR-548av-5p gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHSJI_1861_Peak44803|16|0.2333|4|EU499349|SLC4A7
hsa-miR-548k gaaatGTACTTTTtt AAAAGUAC m8a Disrupted HHSJI_1861_Peak44803|16|0.2333|4|EU499349|SLC4A7
hsa-miR-548n gaaatgTACTTTTtt CAAAAGUA m7b Disrupted HHSJI_1861_Peak44803|16|0.2333|4|EU499349|SLC4A7
hsa-miR-8054 gaaatGTACTTTttt GAAAGUAC m7b Disrupted HHSJI_1861_Peak44803|16|0.2333|4|EU499349|SLC4A7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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