SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0072494
Gene Symbol: SLC38A9
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626554C>A COSM4727301 T578 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3190-3p aattaatCTTCCACg UGUGGAAG m7b Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-4699-5p aattAATCTTCcacg AGAAGAUU m7b Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-6077 aattaaTCTTCCacg GGGAAGAG m6b Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-6505-5p aattaaTATTCCAcg UUGGAAUA m7b Created HHFCT_122587_cluster-18579_7_56

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626542C>T COSM1068932 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1272 acgtttTCATCATCa GAUGAUGA m8a Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-1322 acgttttCATCATCa GAUGAUGC m7a Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-3682-3p acgttttTATCATCa UGAUGAUA m7b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-548ac acGTTTTTatcatca CAAAAACC m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-1272 acgtttTCATCATCa GAUGAUGA m8a Disrupted HHFKP_113458_cluster-18579_11_9
hsa-miR-1322 acgttttCATCATCa GAUGAUGC m7a Disrupted HHFKP_113458_cluster-18579_11_9
hsa-miR-3682-3p acgttttTATCATCa UGAUGAUA m7b Created HHFKP_113458_cluster-18579_11_9
hsa-miR-548ac acGTTTTTatcatca CAAAAACC m6b Created HHFKP_113458_cluster-18579_11_9

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626526G>GG COSM4589814 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-449b-3p tttgggcGTGGCTaa CAGCCACA m6b Disrupted HHFCT_122587_cluster-18579_7_56
hsa-miR-449b-3p tttgggcGTGGCTaa CAGCCACA m6b Disrupted HHFKP_113458_cluster-18579_11_9
Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626517C>T COSM3920206 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626515G>C COSM1311227 TCGA-G2-A2EO-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-377-5p ctAACCTCattgttc AGAGGUUG m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-6086 ctAACCTCattgttc GGAGGUUG m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-655-5p cTAACCTCattgttc AGAGGUUA m7b Created HHFCT_122587_cluster-18579_7_56

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626499TA>A COSM1437892 T3091 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p agtttttATGTGAAa UUCACAUU m7a Created HHFCT_122587_cluster-18579_7_56
hsa-miR-23a-3p agtttttATGTGAaa AUCACAUU m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-23b-3p agtttttATGTGAaa AUCACAUU m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-23c agtttttATGTGAaa AUCACAUU m6b Created HHFCT_122587_cluster-18579_7_56
hsa-miR-548aj-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHFCT_122587_cluster-18579_7_56
hsa-miR-548x-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHFCT_122587_cluster-18579_7_56
hsa-miR-130a-5p agtttttATGTGAAa UUCACAUU m7a Created HHFKP_113457_cluster-18579_10_8
hsa-miR-23a-3p agtttttATGTGAaa AUCACAUU m6b Created HHFKP_113457_cluster-18579_10_8
hsa-miR-23b-3p agtttttATGTGAaa AUCACAUU m6b Created HHFKP_113457_cluster-18579_10_8
hsa-miR-23c agtttttATGTGAaa AUCACAUU m6b Created HHFKP_113457_cluster-18579_10_8
hsa-miR-548aj-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHFKP_113457_cluster-18579_10_8
hsa-miR-548x-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHFKP_113457_cluster-18579_10_8
hsa-miR-130a-5p agtttttATGTGAAa UUCACAUU m7a Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002
hsa-miR-23a-3p agtttttATGTGAaa AUCACAUU m6b Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002
hsa-miR-23b-3p agtttttATGTGAaa AUCACAUU m6b Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002
hsa-miR-23c agtttttATGTGAaa AUCACAUU m6b Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002
hsa-miR-548aj-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002
hsa-miR-548x-3p AGTTTTTAtgtgaaa UAAAAACU m8a Created HHKTA_49632_NM_173514|1879|1918|1.38457411365623|0.217393779882002

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55626145G>T COSN5077585 HX18T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-3p tcagggtTTCAGAGc CCUCUGAA m7b Created HHFCT_122583_cluster-18579_3_29
hsa-miR-301a-5p tcagggtGTCAGAGc GCUCUGAC m7b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-301b-5p tcagggtGTCAGAGc GCUCUGAC m7b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-3620-3p tCAGGGTGtcagagc UCACCCUG m7b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-3660 tcagggTGTCAGagc ACUGACAG m6b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-4526 tcagggTGTCAGagc GCUGACAG m6b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-6730-3p tcaggGTGTCAGagc CCUGACAC m7b Disrupted HHFCT_122583_cluster-18579_3_29
hsa-miR-6732-3p tCAGGGTTtcagagc UAACCCUG m7b Created HHFCT_122583_cluster-18579_3_29
hsa-miR-146a-3p tcagggtTTCAGAGc CCUCUGAA m7b Created HHFKP_113455_cluster-18579_8_52
hsa-miR-301a-5p tcagggtGTCAGAGc GCUCUGAC m7b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-301b-5p tcagggtGTCAGAGc GCUCUGAC m7b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-3620-3p tCAGGGTGtcagagc UCACCCUG m7b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-3660 tcagggTGTCAGagc ACUGACAG m6b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-4526 tcagggTGTCAGagc GCUGACAG m6b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-6730-3p tcaggGTGTCAGagc CCUGACAC m7b Disrupted HHFKP_113455_cluster-18579_8_52
hsa-miR-6732-3p tCAGGGTTtcagagc UAACCCUG m7b Created HHFKP_113455_cluster-18579_8_52

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55625912C>A COSN7947315 8062308 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-489-3p gtaATGTCAatgtaa GUGACAUC m6b Disrupted HHFCT_122581_cluster-18579_1_26

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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