SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001145097
Gene Symbol: SKIL
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.170393158C>T COSN7626575 PCSI_0112_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p ataaTTTTTGaactt ACAAAAAA m6b Created HHFCT_112713_cluster-16263_36_61
hsa-miR-5000-5p ataatttCTGAACTt CAGUUCAG m7b Disrupted HHFCT_112713_cluster-16263_36_61
hsa-miR-548c-3p ataATTTTTGaactt CAAAAAUC m7a Created HHFCT_112713_cluster-16263_36_61
hsa-miR-3613-3p ataaTTTTTGaactt ACAAAAAA m6b Created HHFKP_104823_cluster-16263_31_156
hsa-miR-5000-5p ataatttCTGAACTt CAGUUCAG m7b Disrupted HHFKP_104823_cluster-16263_31_156
hsa-miR-548c-3p ataATTTTTGaactt CAAAAAUC m7a Created HHFKP_104823_cluster-16263_31_156

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170392456G>GT COSN5853525
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ac tgacaaGGTTTTTtt CAAAAACC m7b Disrupted HHFCT_112708_cluster-16263_29_37
hsa-miR-548bb-3p tgacaaGGTTTTTtt CAAAAACC m7b Disrupted HHFCT_112708_cluster-16263_29_37
hsa-miR-548d-3p tgacaaGGTTTTTtt CAAAAACC m7b Disrupted HHFCT_112708_cluster-16263_29_37
hsa-miR-548h-3p tgacaaGGTTTTTtt CAAAAACC m7b Disrupted HHFCT_112708_cluster-16263_29_37
hsa-miR-548z tgacaaGGTTTTTtt CAAAAACC m7b Disrupted HHFCT_112708_cluster-16263_29_37

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391210A>G COSM1642173 pfg008T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4269 aaaatGTGCCTGtga GCAGGCAC m7b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-4438 aaaatgtGCCTGTGa CACAGGCU m7a Created HHFCT_112707_cluster-16263_28_13
hsa-miR-5582-5p aaaaTGTGCCTgtga UAGGCACA m7b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6715b-5p aaaatGTGCCTGTga ACAGGCAC m8a Created HHFCT_112707_cluster-16263_28_13

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391203A>G COSM1041082 TCGA-FI-A2EW-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p tgaagcaAAAATGTa ACAUUUUC m7a Disrupted HHFCT_112707_cluster-16263_28_13
hsa-miR-129-5p tgaaGCAAAAAtgta CUUUUUGC m7b Disrupted HHFCT_112707_cluster-16263_28_13
hsa-miR-153-5p tgaagcAAAAATGta UCAUUUUU m7b Disrupted HHFCT_112707_cluster-16263_28_13
hsa-miR-544a tgaaGCAGAAatgta AUUCUGCA m6b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6071 tgaAGCAGAAatgta UUCUGCUG m7a Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6738-3p tgaaGCAGAAatgta CUUCUGCC m6b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6828-3p tgaAGCAGAaatgta AUCUGCUC m6b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6885-3p tgAAGCAAAaatgta CUUUGCUU m7b (m7b->m6b) HHFCT_112707_cluster-16263_28_13

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391200G>A COSM4797814 CHC892T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-5p taatgaaGCAAAAAt CUUUUUGC m7b Disrupted HHFCT_112707_cluster-16263_28_13
hsa-miR-3977 taaTGAAGCAaaaat GUGCUUCA m7b Disrupted HHFCT_112707_cluster-16263_28_13
hsa-miR-6885-3p taatgAAGCAAAaat CUUUGCUU m7b Disrupted HHFCT_112707_cluster-16263_28_13

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391184T>A COSM3590041 TCGA-D3-A51N-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4268 aaaaaatAGGAGCag GGCUCCUC m6b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-4448 aaaaaatAGGAGCag GGCUCCUU m6b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-6772-3p aaaaaatAGGAGCAg UUGCUCCU m7b Created HHFCT_112707_cluster-16263_28_13
hsa-miR-4268 aaaaaatAGGAGCag GGCUCCUC m6b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-4448 aaaaaatAGGAGCag GGCUCCUU m6b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-6772-3p aaaaaatAGGAGCAg UUGCUCCU m7b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391168G>T COSM1041080 TCGA-D1-A17Q-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1264 acagaAAGACTTaga CAAGUCUU m7b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-3184-3p acagaaAGACTTaga AAAGUCUC m6b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-6830-3p acaGAAAGACttaga UGUCUUUC m7b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170391164G>C COSM419714 TCGA-BT-A20J-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-26b-3p ttGAACAGaaagact CCUGUUCU m6b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-4652-3p ttgAACAGAAagact GUUCUGUU m7b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-5010-3p ttgaACACAAAgact UUUUGUGU m7b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-599 ttgaACACAAagact GUUGUGUC m6b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-6830-3p ttgaacaGAAAGACt UGUCUUUC m7b Disrupted HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792
hsa-miR-6844 ttgaacACAAAGAct UUCUUUGU m7b Created HHKTA_52564_NM_005414|2494|2533|1.29803823155271|0.151460852461792

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170381326C>G COSM4390050 TCGA-BT-A42B-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3646 acacaTTCATTTTta AAAAUGAA m8a Disrupted HPCB3_15613_G21413.1_170099129
hsa-miR-3662 acacatTCATTTTta GAAAAUGA m7b Disrupted HPCB3_15613_G21413.1_170099129
hsa-miR-548c-3p acacattGATTTTTa CAAAAAUC m7b Created HPCB3_15613_G21413.1_170099129
hsa-miR-551b-5p acacaTTGATTTtta GAAAUCAA m7b Created HPCB3_15613_G21413.1_170099129
hsa-miR-3646 acacaTTCATTTTta AAAAUGAA m8a Disrupted HPRO6_54323_G64553.1_170099126
hsa-miR-3662 acacatTCATTTTta GAAAAUGA m7b Disrupted HPRO6_54323_G64553.1_170099126
hsa-miR-548c-3p acacattGATTTTTa CAAAAAUC m7b Created HPRO6_54323_G64553.1_170099126
hsa-miR-551b-5p acacaTTGATTTtta GAAAUCAA m7b Created HPRO6_54323_G64553.1_170099126

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170381272A>T COSM1537127 TCGA-50-5930-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4645-3p gaatTACTGTCatgg AGACAGUA m7b Created HHFCT_112705_cluster-16263_26_12
hsa-miR-943 gaattACAGTCAtgg CUGACUGU m7b Disrupted HHFCT_112705_cluster-16263_26_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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