SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0047685
Gene Symbol: SKA1
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr18:g.50380179G>A COSM1130062 TCGA-CH-5739-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6504-3p gatcatTGTAATaaa CAUUACAG m6b Disrupted HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454
hsa-miR-556-3p gatcattGTAATAaa AUAUUACC m6b Disrupted HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454
hsa-miR-4795-3p gatcattATAATAaa AUAUUAUU m6b Created HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454
hsa-miR-374b-5p gatcATTATAataaa AUAUAAUA m6b Created HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454

Mutation Mutation ID Sample Name Cancer Type
chr18:g.50380175C>A COSM1136062 TCGA-A3-3372-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7849-3p atgagatAATTGTaa GACAAUUG m6b Created HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454
hsa-miR-7641 atGAGATCAttgtaa UUGAUCUC m7b (m7b->m6b) HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454
hsa-miR-4695-3p aTGAGATCAttgtaa UGAUCUCA m8a (m8a->m7a) HHKTA_22226_NM_001039535|335|374|3.28836351993354|0.421569625975454

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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