| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| Transcript ID: | NM_004169 |
|---|---|
| Gene Symbol: | SHMT1 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr17:g.18328826C>T | COSM976307 | TCGA-BS-A0TA-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-1908-3p | taccagGCGGCCGtg | CCGGCCGC | m7b | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-4485-5p | tacCAGGCGGccgtg | ACCGCCUG | m7b | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6765-3p | taCCAGGTGgccgtg | UCACCUGG | m7b | (m6b->m7b) | HHFCT_62215_cluster-10096_2_8 |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr17:g.18328825G>A | COSM3370638 | TCGA-DJ-A3UK-01 | [thyroid][NS][carcinoma][NS] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-1908-3p | accagGCGGCCGtgc | CCGGCCGC | m7b | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-4485-5p | acCAGGCGGccgtgc | ACCGCCUG | m7b | (m7b->m6b) | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6882-3p | accAGGCAGCcgtgc | UGCUGCCU | m7b | Created | HHFCT_62215_cluster-10096_2_8 |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr17:g.18328805A>G | COSM3818982 | TCGA-A2-A0T6-01 | [breast][NS][carcinoma][NS] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-5193 | ctccggGAGGAGGtt | UCCUCCUC | m7b | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6749-3p | ctccGGGAGGAGgtt | CUCCUCCC | m8a | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6840-5p | ctCCGGGGGgaggtt | ACCCCCGG | m7b | (m6b->m7b) | HHFCT_62215_cluster-10096_2_8 |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||
|---|---|---|---|---|---|
| chr17:g.18328803G>A | COSM3514929 | TCGA-D3-A5GU-06 | [skin][NS][malignant_melanoma][NS] | ||
| miRNA Targets Table | |||||
| miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
| hsa-miR-3150a-5p | ccgggagGAGGTTGa | CAACCUCG | m7a | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-3150b-5p | ccgggagGAGGTTGa | CAACCUCG | m7a | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-5193 | ccggGAGGAGGttga | UCCUCCUC | m7b | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-629-3p | ccGGGAGAAggttga | GUUCUCCC | m7b | (m6b->m7b) | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6749-3p | ccGGGAGGAGgttga | CUCCUCCC | m8a | Disrupted | HHFCT_62215_cluster-10096_2_8 |
| hsa-miR-6867-3p | ccGGGAGAaggttga | CUCUCCCU | m6b | Created | HHFCT_62215_cluster-10096_2_8 |