SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0018398
Gene Symbol: SGMS1
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr10:g.50572999T>G COSN5875907 RK211_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-5p cagctATGGAGatga ACUCCAUU m6b Created HHFCT_17806_cluster-2964_62_8

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311392A>G COSM4905914 TCGA-EE-A17X-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-3p aagcCCAGCTGcgaa UCAGCUGG m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-3147 aaGCCCAACtgcgaa GGUUGGGC m7b (m7b->m6b) HHFCT_17767_cluster-2964_19_20
hsa-miR-378g aAGCCCAGctgcgaa ACUGGGCU m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-4259 aagCCCAACTGcgaa CAGUUGGG m8a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-1207-3p aagcCCAGCTGcgaa UCAGCUGG m7b Created HHFKP_16890_cluster-2964_20_368
hsa-miR-3147 aaGCCCAACtgcgaa GGUUGGGC m7b (m7b->m6b) HHFKP_16890_cluster-2964_20_368
hsa-miR-378g aAGCCCAGctgcgaa ACUGGGCU m7b Created HHFKP_16890_cluster-2964_20_368
hsa-miR-4259 aagCCCAACTGcgaa CAGUUGGG m8a Disrupted HHFKP_16890_cluster-2964_20_368
hsa-miR-1207-3p aagcCCAGCTGcgaa UCAGCUGG m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-3147 aaGCCCAACtgcgaa GGUUGGGC m7b (m7b->m6b) HHFCT_17767_cluster-2964_19_20
hsa-miR-3147 aaGCCCAACtgcgaa GGUUGGGC m7b (m7b->m6b) HHFKP_16890_cluster-2964_20_368
hsa-miR-378g aAGCCCAGctgcgaa ACUGGGCU m7b Created HHFKP_16890_cluster-2964_20_368
hsa-miR-4259 aagCCCAACTGcgaa CAGUUGGG m8a Disrupted HHFKP_16890_cluster-2964_20_368
hsa-miR-378g aAGCCCAGctgcgaa ACUGGGCU m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-4259 aagCCCAACTGcgaa CAGUUGGG m8a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-1207-3p aagcCCAGCTGcgaa UCAGCUGG m7b Created HHFKP_16890_cluster-2964_20_368

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311387G>A COSM3438560 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6516-5p caACTGCAAAgaata UUUGCAGU m8a Created HHFCT_17767_cluster-2964_19_20
hsa-miR-6875-3p caactgcGAAGAATa AUUCUUCC m7a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-6516-5p caACTGCAAAgaata UUUGCAGU m8a Created HHFKP_16890_cluster-2964_20_368
hsa-miR-6875-3p caactgcGAAGAATa AUUCUUCC m7a Disrupted HHFKP_16890_cluster-2964_20_368
hsa-miR-6516-5p caACTGCAAAgaata UUUGCAGU m8a Created HHFCT_17767_cluster-2964_19_20
hsa-miR-6875-3p caactgcGAAGAATa AUUCUUCC m7a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-6516-5p caACTGCAAAgaata UUUGCAGU m8a Created HHFKP_16890_cluster-2964_20_368
hsa-miR-6875-3p caactgcGAAGAATa AUUCUUCC m7a Disrupted HHFKP_16890_cluster-2964_20_368

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311371C>A COSM284951 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3908 tgaagctCATTGCTg GAGCAAUG m7b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-556-5p tgaAGCTCATtgctg GAUGAGCU m7b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-3908 tgaagctCATTGCTg GAGCAAUG m7b Disrupted HHFKP_16890_cluster-2964_20_368
hsa-miR-556-5p tgaAGCTCATtgctg GAUGAGCU m7b Disrupted HHFKP_16890_cluster-2964_20_368

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311345C>T COSM4874704 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4676-5p tctatcACTGGCTCt GAGCCAGU m8a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-575 tctatcACTGGCTCt GAGCCAGU m8a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-4676-5p tctatcACTGGCTCt GAGCCAGU m8a Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-575 tctatcACTGGCTCt GAGCCAGU m8a Disrupted HHFCT_17767_cluster-2964_19_20

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311323G>A COSM3438559 TCGA-EE-A2GC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4286 tgtGTGGGGactatc ACCCCACU m6b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-4474-5p tgtgtgGAGACTAtc UUAGUCUC m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-5588-3p tgtgtgGGGACTatc AAGUCCCA m6b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-4286 tgtGTGGGGactatc ACCCCACU m6b Disrupted HHFKP_16889_cluster-2964_19_161
hsa-miR-4474-5p tgtgtgGAGACTAtc UUAGUCUC m7b Created HHFKP_16889_cluster-2964_19_161
hsa-miR-5588-3p tgtgtgGGGACTatc AAGUCCCA m6b Disrupted HHFKP_16889_cluster-2964_19_161
hsa-miR-4286 tgtGTGGGGactatc ACCCCACU m6b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-4474-5p tgtgtgGAGACTAtc UUAGUCUC m7b Created HHFCT_17767_cluster-2964_19_20
hsa-miR-5588-3p tgtgtgGGGACTatc AAGUCCCA m6b Disrupted HHFCT_17767_cluster-2964_19_20
hsa-miR-4286 tgtGTGGGGactatc ACCCCACU m6b Disrupted HHFKP_16889_cluster-2964_19_161
hsa-miR-4474-5p tgtgtgGAGACTAtc UUAGUCUC m7b Created HHFKP_16889_cluster-2964_19_161
hsa-miR-5588-3p tgtgtgGGGACTatc AAGUCCCA m6b Disrupted HHFKP_16889_cluster-2964_19_161

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311282C>T COSM4014546 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HHFCT_17765_cluster-2964_17_10
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HHKTA_13235_NM_147156|1807|1846|5.36522469041788|0.198400288534171
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPKTA_9482_G10100.1_52071037
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPKTB_1679_G2115.1_52071046
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPSLB_1113_G1359.1_52071046
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HHFCT_17765_cluster-2964_17_10
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HHKTA_13235_NM_147156|1807|1846|5.36522469041788|0.198400288534171
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPKTA_9482_G10100.1_52071037
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPKTB_1679_G2115.1_52071046
hsa-miR-3935 acactTATCTACtta UGUAGAUA m7b Created HPSLB_1113_G1359.1_52071046

Mutation Mutation ID Sample Name Cancer Type
chr10:g.50311270T>G COSM1716049 11 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3161 ttatTTATCAaagag CUGAUAAG m6b Disrupted HHFCT_17765_cluster-2964_17_10
hsa-miR-4639-5p ttatTTAGCAAagag UUGCUAAG m7a Created HHFCT_17765_cluster-2964_17_10
hsa-miR-6885-3p ttatttAGCAAAGag CUUUGCUU m7a Created HHFCT_17765_cluster-2964_17_10
hsa-miR-3161 ttatTTATCAaagag CUGAUAAG m6b Disrupted HHKTA_13235_NM_147156|1807|1846|5.36522469041788|0.198400288534171
hsa-miR-4639-5p ttatTTAGCAAagag UUGCUAAG m7a Created HHKTA_13235_NM_147156|1807|1846|5.36522469041788|0.198400288534171
hsa-miR-6885-3p ttatttAGCAAAGag CUUUGCUU m7a Created HHKTA_13235_NM_147156|1807|1846|5.36522469041788|0.198400288534171
hsa-miR-3161 ttatTTATCAaagag CUGAUAAG m6b Disrupted HPKTA_9482_G10100.1_52071037
hsa-miR-4639-5p ttatTTAGCAAagag UUGCUAAG m7a Created HPKTA_9482_G10100.1_52071037
hsa-miR-6885-3p ttatttAGCAAAGag CUUUGCUU m7a Created HPKTA_9482_G10100.1_52071037
hsa-miR-3161 ttatTTATCAaagag CUGAUAAG m6b Disrupted HPKTB_1679_G2115.1_52071046
hsa-miR-4639-5p ttatTTAGCAAagag UUGCUAAG m7a Created HPKTB_1679_G2115.1_52071046
hsa-miR-6885-3p ttatttAGCAAAGag CUUUGCUU m7a Created HPKTB_1679_G2115.1_52071046
hsa-miR-3161 ttatTTATCAaagag CUGAUAAG m6b Disrupted HPSLB_1113_G1359.1_52071046
hsa-miR-4639-5p ttatTTAGCAAagag UUGCUAAG m7a Created HPSLB_1113_G1359.1_52071046
hsa-miR-6885-3p ttatttAGCAAAGag CUUUGCUU m7a Created HPSLB_1113_G1359.1_52071046

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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