SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_152754
Gene Symbol: SEMA3D
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr7:g.85029028T>C COSN8572498 tumor_4135099 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4475 ttTCCCTTGatatta CAAGGGAC m7a (m7a->m6a) HPCB1_36707_G46991.1_84658321
hsa-miR-561-5p tttcCCTTGATatta AUCAAGGA m7a Disrupted HPCB1_36707_G46991.1_84658321
Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015185T>C COSM4798975 BCM325T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015175C>G COSM3833392 TCGA-GI-A2C9-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3160-3p tTCAGCTCTccttgc AGAGCUGA m8a (m8a->m7a) HHFKP_131393_cluster-21491_4_8
hsa-miR-4428 ttcagcTCTCCTTGc CAAGGAGA m8a Disrupted HHFKP_131393_cluster-21491_4_8
hsa-miR-8080 ttcagcTGTCCTTgc GAAGGACA m7b Created HHFKP_131393_cluster-21491_4_8

Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015172C>T COSM1724277 4_PRE-TREATMENT [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-19a-3p agctctcTTTGCACa UGUGCAAA m7b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-19b-3p agctctcTTTGCACa UGUGCAAA m7b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-4311 agcTCTCTTTgcaca GAAAGAGA m7b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-4428 agcTCTCCTTGcaca CAAGGAGA m8a Disrupted HHFKP_131393_cluster-21491_4_8
hsa-miR-4708-3p agctctCCTTGCaca AGCAAGGC m6b Disrupted HHFKP_131393_cluster-21491_4_8
hsa-miR-518a-5p agctctCTTTGCAca CUGCAAAG m7b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-527 agctctCTTTGCAca CUGCAAAG m7b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-548aw agctctcTTTGCACa GUGCAAAA m7a Created HHFKP_131393_cluster-21491_4_8

Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015168C>A COSM1550479 TCGA-44-7670-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-26b-3p ctccttGAACAGatg CCUGUUCU m6b Created HHFKP_131393_cluster-21491_4_8
hsa-miR-4708-3p ctCCTTGCacagatg AGCAAGGC m6b Disrupted HHFKP_131393_cluster-21491_4_8
hsa-miR-5008-3p ctccttGCACAGatg CCUGUGCU m6b Disrupted HHFKP_131393_cluster-21491_4_8
hsa-miR-561-5p cTCCTTGAacagatg AUCAAGGA m7b Created HHFKP_131393_cluster-21491_4_8

Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015166C>T COSM602602 TCGA-05-4434-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5008-3p ccttGCACAGatgcg CCUGUGCU m6b Disrupted HHFKP_131393_cluster-21491_4_8
Mutation Mutation ID Sample Name Cancer Type
chr7:g.85015162T>C COSM76372 TCGA-25-1315-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr7:g.85012095G>C COSN8042949 8015858 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p gggaAAAGAGaggag ACUCUUUC m6b Disrupted HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-3183 gggaaaAGAGAGGag GCCUCUCU m7b Disrupted HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-4723-3p gggaaaAGAGAGGag CCCUCUCU m7b Disrupted HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-4753-3p gggaAAAGAGAggag UUCUCUUU m7b Disrupted HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-6769b-3p gggaaaAGAGAGGag CCCUCUCU m7b Disrupted HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-6780a-3p gggaaaaCAGAGGAg CUCCUCUG m7b Created HHRBC_12119_BC3-2of3-SCL_12637
hsa-miR-7111-3p gggaaaaGAGAGGAg AUCCUCUC m7b Disrupted HHRBC_12119_BC3-2of3-SCL_12637

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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