SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_033280
Gene Symbol: SEC11C
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr18:g.59155758G>T COSM284848 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1248 gtacaAAGAAGGcca ACCUUCUU m7b Disrupted HHFKP_68443_cluster-10860_2_17
hsa-miR-6844 gtACAAAGAAggcca UUCUUUGU m8a Disrupted HHFKP_68443_cluster-10860_2_17

Mutation Mutation ID Sample Name Cancer Type
chr18:g.59152594G>A COSM3526820 TCGA-EE-A29D-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3124-3p tttccGGAAAGaccc ACUUUCCU m6b Created HPRO6_36254_G42873.1_56819818
hsa-miR-4664-3p tttCCGGAAagaccc CUUCCGGU m6b Created HPRO6_36254_G42873.1_56819818
hsa-miR-6830-3p tttccgGAAAGACcc UGUCUUUC m7b Created HPRO6_36254_G42873.1_56819818
hsa-miR-3124-3p tttccGGAAAGaccc ACUUUCCU m6b Created HPTA1_5416_G7620.1_56819818
hsa-miR-4664-3p tttCCGGAAagaccc CUUCCGGU m6b Created HPTA1_5416_G7620.1_56819818
hsa-miR-6830-3p tttccgGAAAGACcc UGUCUUUC m7b Created HPTA1_5416_G7620.1_56819818
Mutation Mutation ID Sample Name Cancer Type
chr18:g.59152591C>T COSM989329 TCGA-A5-A0VP-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr18:g.59152578C>T COSM3891197 TCGA-BF-A3DM-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1224-5p tcctgtTCCTCACaa GUGAGGAC m7a Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-1294 tcctgttCCTCACAa UGUGAGGU m7a Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-3915 tcctgTTCCTCAcaa UUGAGGAA m7b Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-3928-3p tcctGTTCCTCacaa GGAGGAAC m7b Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-4316 tcctgttCCTCACaa GGUGAGGC m6b Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-539-5p tcctgTTTCTCacaa GGAGAAAU m6b Created HPRO6_36254_G42873.1_56819818
hsa-miR-6858-5p tcctgtTCCTCACaa GUGAGGAG m7a Disrupted HPRO6_36254_G42873.1_56819818
hsa-miR-1224-5p tcctgtTCCTCACaa GUGAGGAC m7a Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-1294 tcctgttCCTCACAa UGUGAGGU m7a Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-3915 tcctgTTCCTCAcaa UUGAGGAA m7b Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-3928-3p tcctGTTCCTCacaa GGAGGAAC m7b Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-4316 tcctgttCCTCACaa GGUGAGGC m6b Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-539-5p tcctgTTTCTCacaa GGAGAAAU m6b Created HPTA1_5416_G7620.1_56819818
hsa-miR-6858-5p tcctgtTCCTCACaa GUGAGGAG m7a Disrupted HPTA1_5416_G7620.1_56819818
hsa-miR-1224-5p tcctgtTCCTCACaa GUGAGGAC m7a Disrupted HPTA3_8876_G13942.1_56819824
hsa-miR-1294 tcctgttCCTCACAa UGUGAGGU m7a Disrupted HPTA3_8876_G13942.1_56819824
hsa-miR-3915 tcctgTTCCTCAcaa UUGAGGAA m7b Disrupted HPTA3_8876_G13942.1_56819824
hsa-miR-3928-3p tcctGTTCCTCacaa GGAGGAAC m7b Disrupted HPTA3_8876_G13942.1_56819824
hsa-miR-4316 tcctgttCCTCACaa GGUGAGGC m6b Disrupted HPTA3_8876_G13942.1_56819824
hsa-miR-539-5p tcctgTTTCTCacaa GGAGAAAU m6b Created HPTA3_8876_G13942.1_56819824
hsa-miR-6858-5p tcctgtTCCTCACaa GUGAGGAG m7a Disrupted HPTA3_8876_G13942.1_56819824

Mutation Mutation ID Sample Name Cancer Type
chr18:g.59149592G>A COSM1389364 TCGA-CK-6746-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3120-5p ctcaCAGACAGtgag CCUGUCUG m7b Created HHFCT_73448_cluster-10860_2_12
hsa-miR-4677-3p CTCACAGAcagtgag UCUGUGAG m8a Created HHFCT_73448_cluster-10860_2_12
hsa-miR-6514-3p ctcACAGGCAGtgag CUGCCUGU m8a Disrupted HHFCT_73448_cluster-10860_2_12
hsa-miR-6760-3p ctcacaGACAGTGag ACACUGUC m7b Created HHFCT_73448_cluster-10860_2_12
hsa-miR-6811-3p ctCACAGGCagtgag AGCCUGUG m7b (m7b->m6b) HHFCT_73448_cluster-10860_2_12
hsa-miR-6890-3p ctcacaGGCAGTGag CCACUGCC m7b Disrupted HHFCT_73448_cluster-10860_2_12
Mutation Mutation ID Sample Name Cancer Type
chr18:g.59149537G>A COSM191897 TCGA-AA-A00E-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr18:g.59149536C>T COSM3970599 TCGA-FG-A4MW-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-561-3p tAAACTTTGccatga CAAAGUUU m8a (m7a->m8a) HHFCT_73447_cluster-10860_1_8
hsa-miR-561-3p tAAACTTTGccatga CAAAGUUU m8a (m7a->m8a) HPRO6_36253_G42872.1_56816752

Mutation Mutation ID Sample Name Cancer Type
chr18:g.59149515C>T COSM1303797 TCGA-GV-A3QH-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3160-3p tcCAGCTCTattacc AGAGCUGA m7a (m7a->m6a) HPRO6_36253_G42872.1_56816752
hsa-miR-320a tcCAGCTTTattacc AAAAGCUG m7b (m6b->m7b) HPRO6_36253_G42872.1_56816752
hsa-miR-320b tcCAGCTTTattacc AAAAGCUG m7b (m6b->m7b) HPRO6_36253_G42872.1_56816752
hsa-miR-320c tcCAGCTTTattacc AAAAGCUG m7b (m6b->m7b) HPRO6_36253_G42872.1_56816752
hsa-miR-320d tcCAGCTTTattacc AAAAGCUG m7b (m6b->m7b) HPRO6_36253_G42872.1_56816752
hsa-miR-320e tCCAGCTTTattacc AAAGCUGG m8a (m7a->m8a) HPRO6_36253_G42872.1_56816752
hsa-miR-4429 tcCAGCTTTattacc AAAAGCUG m7b (m6b->m7b) HPRO6_36253_G42872.1_56816752
hsa-miR-4487 tCCAGCTCTattacc AGAGCUGG m8a (m8a->m7a) HPRO6_36253_G42872.1_56816752
hsa-miR-5590-3p tccagCTTTATTacc AAUAAAGU m7a Created HPRO6_36253_G42872.1_56816752
hsa-miR-9-3p tccAGCTTTATtacc AUAAAGCU m8a Created HPRO6_36253_G42872.1_56816752

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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