SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_152744
Gene Symbol: SDK1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.3530452A>T COSN6879868 RK122_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5692a tgTTATTTacctgtg CAAAUAAU m6b Created HHFCT_145476_cluster-20630_27_8

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3508685C>A COSN2220980 RK080_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15b-3p acctttcATGATTCt CGAAUCAU m7b Created HHFKP_133819_cluster-20630_20_18
hsa-miR-488-3p aCCTTTCAtgattct UUGAAAGG m7b Created HHFKP_133819_cluster-20630_20_18
hsa-miR-7154-5p acctTTCATGAttct UUCAUGAA m7b Created HHFKP_133819_cluster-20630_20_18
hsa-miR-8060 acctTTCATGattct CCAUGAAG m6b Created HHFKP_133819_cluster-20630_20_18
hsa-miR-873-5p acctTTCCTGattct GCAGGAAC m6b Disrupted HHFKP_133819_cluster-20630_20_18

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3498986G>T COSN14965837 LP6005409-DNA_G03 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-126-5p ttggTAATAATttgc CAUUAUUA m7b Created HPRT3_23123_G30862.1_3538622
hsa-miR-556-3p ttGGTAATAatttgc AUAUUACC m7b (m6b->m7b) HPRT3_23123_G30862.1_3538622
hsa-miR-944 ttggtAATAATTTgc AAAUUAUU m8a Created HPRT3_23123_G30862.1_3538622

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3474640C>A COSN6879681 RK212_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-1-3p ctttcCAACTCTaat AGAGUUGA m7a Created HHFCT_145464_cluster-20630_15_9
hsa-miR-3978 CTTTCCACctctaat GUGGAAAG m8a Disrupted HHFCT_145464_cluster-20630_15_9
hsa-miR-571 ctttCCAACTCtaat UGAGUUGG m7b Created HHFCT_145464_cluster-20630_15_9
hsa-miR-6134 ctttCCACCTCtaat UGAGGUGG m7b Disrupted HHFCT_145464_cluster-20630_15_9
hsa-miR-877-5p ctttccaCCTCTAat GUAGAGGA m6b Disrupted HHFCT_145464_cluster-20630_15_9

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3457325G>T COSN9986548 AOCS-139-12-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3125 ttagttTTCCTCTtt UAGAGGAA m7b Created HHFCT_145461_cluster-20630_12_9
hsa-miR-3916 ttagttTTCCTCTTt AAGAGGAA m8a Created HHFCT_145461_cluster-20630_12_9
hsa-miR-4470 ttaGTTTGCCtcttt UGGCAAAC m7b Disrupted HHFCT_145461_cluster-20630_12_9
hsa-miR-6859-5p ttagttTTCCTCTtt GAGAGGAA m7b Created HHFCT_145461_cluster-20630_12_9

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3437385T>A COSN6879552 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4504 aTGTCACAaatgttt UGUGACAA m7a Created HHFCT_145459_cluster-20630_10_14
hsa-miR-6808-3p atGTCACAaatgttt GUGUGACC m6b Created HHFCT_145459_cluster-20630_10_14
hsa-miR-758-3p atGTCACAAAtgttt UUUGUGAC m8a Created HHFCT_145459_cluster-20630_10_14
hsa-miR-921 atgTCACTAatgttt CUAGUGAG m6b Disrupted HHFCT_145459_cluster-20630_10_14
hsa-miR-4504 aTGTCACAaatgttt UGUGACAA m7a Created HHFKP_133812_cluster-20630_13_9
hsa-miR-6808-3p atGTCACAaatgttt GUGUGACC m6b Created HHFKP_133812_cluster-20630_13_9
hsa-miR-758-3p atGTCACAAAtgttt UUUGUGAC m8a Created HHFKP_133812_cluster-20630_13_9
hsa-miR-921 atgTCACTAatgttt CUAGUGAG m6b Disrupted HHFKP_133812_cluster-20630_13_9

Mutation Mutation ID Sample Name Cancer Type
chr7:g.3337824A>G COSN5656167 RK010_C [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-204-5p gaAAAGGGAAacttt UUCCCUUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-211-5p gaAAAGGGAAacttt UUCCCUUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-4446-5p gaaaAGGGAAActtt AUUUCCCU m7b Created HHFCT_145453_cluster-20630_4_7
hsa-miR-4755-5p gaaAAGGGAAActtt UUUCCCUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-5006-3p gaaAAGGGAAActtt UUUCCCUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-623 gaaAAGGGAaacttt AUCCCUUG m6b Created HHFCT_145453_cluster-20630_4_7
hsa-miR-6832-3p gAAAAGGGaaacttt ACCCUUUU m7b Created HHFCT_145453_cluster-20630_4_7
hsa-miR-204-5p gaAAAGGGAAacttt UUCCCUUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-211-5p gaAAAGGGAAacttt UUCCCUUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-4446-5p gaaaAGGGAAActtt AUUUCCCU m7b Created HHFCT_145453_cluster-20630_4_7
hsa-miR-4755-5p gaaAAGGGAAActtt UUUCCCUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-5006-3p gaaAAGGGAAActtt UUUCCCUU m8a Created HHFCT_145453_cluster-20630_4_7
hsa-miR-623 gaaAAGGGAaacttt AUCCCUUG m6b Created HHFCT_145453_cluster-20630_4_7
hsa-miR-6832-3p gAAAAGGGaaacttt ACCCUUUU m7b Created HHFCT_145453_cluster-20630_4_7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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