SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001079653
Gene Symbol: SDK1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.4266922G>T COSN6882340 RK219_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3912-5p agggtagTGGACAac AUGUCCAU m6b Created HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4436b-5p agggtAGTGGACaac GUCCACUU m7a Created HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4646-3p agggtagGGGACAAc AUUGUCCC m7b Disrupted HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4999-3p agGGTAGTGgacaac UCACUACC m7b (m6b->m7b) HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-3162-3p agGGTAGGGgacaac UCCCUACC m7b (m7b->m6b) HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4433b-5p agggtagGGGACAac AUGUCCCA m6b Disrupted HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4433b-5p agggtagGGGACAac AUGUCCCA m6b Disrupted HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4436b-5p agggtAGTGGACaac GUCCACUU m7a Created HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4646-3p agggtagGGGACAAc AUUGUCCC m7b Disrupted HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4999-3p agGGTAGTGgacaac UCACUACC m7b (m6b->m7b) HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-3912-5p agggtagTGGACAac AUGUCCAU m6b Created HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-3162-3p agGGTAGGGgacaac UCCCUACC m7b (m7b->m6b) HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417

Mutation Mutation ID Sample Name Cancer Type
chr7:g.4266921G>T COSN6882339 RK219_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4433b-5p gagggtaTGGGACAa AUGUCCCA m7b Created HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4433a-5p gagggtaTGGGACaa CGUCCCAC m6b Created HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-3162-3p gagGGTAGGGgacaa UCCCUACC m7b Disrupted HHHNE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-3162-3p gagGGTAGGGgacaa UCCCUACC m7b Disrupted HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4433a-5p gagggtaTGGGACaa CGUCCCAC m6b Created HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417
hsa-miR-4433b-5p gagggtaTGGGACAa AUGUCCCA m7b Created HHHSE_16216_SDK1|NM_152744|exon_utr3|-5.36741325779079|-1.15866436837417

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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