SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001082959
Gene Symbol: SCARB1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.124857324G>A COSN6613760 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1298-3p tgtggCCAGATactg CAUCUGGG m6b Created HHFKP_34264_cluster-5839_34_44
hsa-miR-3126-3p tgtgGCCAGATactg CAUCUGGC m7b Created HHFKP_34264_cluster-5839_34_44
hsa-miR-3176 tgtGGCCAGatactg ACUGGCCU m6b Created HHFKP_34264_cluster-5839_34_44
hsa-miR-3190-5p tgTGGCCAGAtactg UCUGGCCA m8a Created HHFKP_34264_cluster-5839_34_44
hsa-miR-3713 tgtggcCGGATACtg GGUAUCCG m7b Disrupted HHFKP_34264_cluster-5839_34_44
hsa-miR-4701-5p tGTGGCCAgatactg UUGGCCAC m7b Created HHFKP_34264_cluster-5839_34_44
hsa-miR-588 tGTGGCCAgatactg UUGGCCAC m7b Created HHFKP_34264_cluster-5839_34_44
hsa-miR-6850-3p tgtGGCCGGatactg CCCGGCCG m6b Disrupted HHFKP_34264_cluster-5839_34_44

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124830761A>G COSN15088405 LP6005690-DNA_A02 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5003-3p attaaGAAAAGTgca UACUUUUC m7b Disrupted HHFCT_35647_cluster-5839_31_10
hsa-miR-627-3p attaAGAAAAGtgca UCUUUUCU m7b Disrupted HHFCT_35647_cluster-5839_31_10
hsa-miR-6809-3p attAAGAGAAGtgca CUUCUCUU m8a Created HHFCT_35647_cluster-5839_31_10
hsa-miR-942-5p attaAGAGAAGtgca UCUUCUCU m7b Created HHFCT_35647_cluster-5839_31_10

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124824729T>G COSN5831753 SS6003305 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6807-5p ggggctTGGCTCACa GUGAGCCA m8a Created HHFCT_35646_cluster-5839_30_8

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782781A>G COSM314999 S01453 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2681-5p tagtaGTAAAAaggg GUUUUACC m6b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-4999-3p taGTAGTGAaaaggg UCACUACC m7a (m6a->m7a) HPSLC_5195_G6160.1_125267339
hsa-miR-5096 tagtaGTGAAAaggg GUUUCACC m6b Created HPSLC_5195_G6160.1_125267339

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782776G>A COSM4527039 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1225-3p gtaaaaaGGGCTCAa UGAGCCCC m7a Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-1233-3p gtaaaaAGGGCTCAa UGAGCCCU m8a Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-129-1-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-129-2-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-2114-3p gtaaaaaAGGCTCaa CGAGCCUC m6b Created HHFKP_34248_cluster-5839_17_16
hsa-miR-6823-3p gtaaaaaAGGCTCAa UGAGCCUC m7a Created HHFKP_34248_cluster-5839_17_16
hsa-miR-6832-3p gtaAAAAGGGctcaa ACCCUUUU m7b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-1225-3p gtaaaaaGGGCTCAa UGAGCCCC m7a Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-1233-3p gtaaaaAGGGCTCAa UGAGCCCU m8a Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-129-1-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-129-2-3p gtaaaAAGGGCTcaa AAGCCCUU m7b Disrupted HPSLC_5195_G6160.1_125267339
hsa-miR-2114-3p gtaaaaaAGGCTCaa CGAGCCUC m6b Created HPSLC_5195_G6160.1_125267339
hsa-miR-6823-3p gtaaaaaAGGCTCAa UGAGCCUC m7a Created HPSLC_5195_G6160.1_125267339
hsa-miR-6832-3p gtaAAAAGGGctcaa ACCCUUUU m7b Disrupted HPSLC_5195_G6160.1_125267339

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782735C>T COSM3811415 TCGA-AO-A03M-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-211-3p tctgaaTCCCTGatg GCAGGGAC m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-4441 tctgaaTCCCTGatg ACAGGGAG m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-6754-5p tctgaaTCCCTGatg CCAGGGAG m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-873-5p tctgaaTTCCTGatg GCAGGAAC m6b Created HHFCT_35630_cluster-5839_13_24
hsa-miR-211-3p tctgaaTCCCTGatg GCAGGGAC m6b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-4441 tctgaaTCCCTGatg ACAGGGAG m6b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-6754-5p tctgaaTCCCTGatg CCAGGGAG m6b Disrupted HHFKP_34248_cluster-5839_17_16
hsa-miR-873-5p tctgaaTTCCTGatg GCAGGAAC m6b Created HHFKP_34248_cluster-5839_17_16

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782732T>C COSM1733028 ACINAR01 [pancreas][NS][carcinoma][acinar_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-211-3p gaaTCCCTGatgaca GCAGGGAC m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-4441 gaaTCCCTGatgaca ACAGGGAG m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-4450 gAATCCCCgatgaca UGGGGAUU m7b Created HHFCT_35630_cluster-5839_13_24
hsa-miR-542-5p gaATCCCCGAtgaca UCGGGGAU m8a Created HHFCT_35630_cluster-5839_13_24
hsa-miR-6754-5p gaaTCCCTGatgaca CCAGGGAG m6b Disrupted HHFCT_35630_cluster-5839_13_24
hsa-miR-6777-5p gaaTCCCCGatgaca ACGGGGAG m6b Created HHFCT_35630_cluster-5839_13_24
Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782729T>C COSM467982 TCGA-A3-3385-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.124782709T>C COSM1359946 TCGA-D5-6927-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1233-3p caAGGGCTCtgtgct UGAGCCCU m7b (m7b->m6b) HHFCT_35630_cluster-5839_13_24
hsa-miR-3918 caagGGCCCTGTgct ACAGGGCC m8a Created HHFCT_35630_cluster-5839_13_24
hsa-miR-6851-3p cAAGGGCCctgtgct UGGCCCUU m7b Created HHFCT_35630_cluster-5839_13_24
hsa-miR-7160-3p caaGGGCCCTGtgct CAGGGCCC m8a Created HHFCT_35630_cluster-5839_13_24
hsa-miR-1233-3p caAGGGCTCtgtgct UGAGCCCU m7b (m7b->m6b) HHFKP_34247_cluster-5839_16_12
hsa-miR-3918 caagGGCCCTGTgct ACAGGGCC m8a Created HHFKP_34247_cluster-5839_16_12
hsa-miR-6851-3p cAAGGGCCctgtgct UGGCCCUU m7b Created HHFKP_34247_cluster-5839_16_12
hsa-miR-7160-3p caaGGGCCCTGtgct CAGGGCCC m8a Created HHFKP_34247_cluster-5839_16_12

Mutation Mutation ID Sample Name Cancer Type
chr12:g.124778560A>T COSM4451831 CSCC-17-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1972 gccagccTGGCCTGg UCAGGCCA m7b Created HHFCT_35626_cluster-5839_9_7
hsa-miR-3064-5p gcCAGCCAGgcctgg UCUGGCUG m7b (m7b->m6b) HHFCT_35626_cluster-5839_9_7
hsa-miR-4650-5p gccagccAGGCCTGg UCAGGCCU m7b Disrupted HHFCT_35626_cluster-5839_9_7
hsa-miR-4755-3p gccaGCCTGGCctgg AGCCAGGC m7b Created HHFCT_35626_cluster-5839_9_7
hsa-miR-6504-5p gcCAGCCAGgcctgg UCUGGCUG m7b (m7b->m6b) HHFCT_35626_cluster-5839_9_7
hsa-miR-1972 gccagccTGGCCTGg UCAGGCCA m7b Created HHFKP_34242_cluster-5839_11_23
hsa-miR-3064-5p gcCAGCCAGgcctgg UCUGGCUG m7b (m7b->m6b) HHFKP_34242_cluster-5839_11_23
hsa-miR-4650-5p gccagccAGGCCTGg UCAGGCCU m7b Disrupted HHFKP_34242_cluster-5839_11_23
hsa-miR-4755-3p gccaGCCTGGCctgg AGCCAGGC m7b Created HHFKP_34242_cluster-5839_11_23
hsa-miR-6504-5p gcCAGCCAGgcctgg UCUGGCUG m7b (m7b->m6b) HHFKP_34242_cluster-5839_11_23

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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