SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002957
Gene Symbol: RXRA
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.134436568A>G COSM1460914 TCGA-AZ-4315-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p cccattgGCACCTTc UAAGGUGC m7b Created HHFKP_150971_cluster-23071_139_20
hsa-miR-18b-5p cccattgGCACCTTc UAAGGUGC m7b Created HHFKP_150971_cluster-23071_139_20
hsa-miR-192-3p cccATTGGCAccttc CUGCCAAU m7b Created HHFKP_150971_cluster-23071_139_20
hsa-miR-4735-3p cccattgGCACCTTc AAAGGUGC m7b Created HHFKP_150971_cluster-23071_139_20
hsa-miR-18a-5p cccattgGCACCTTc UAAGGUGC m7b Created HPRO6_77119_G92457.1_137328425
hsa-miR-18b-5p cccattgGCACCTTc UAAGGUGC m7b Created HPRO6_77119_G92457.1_137328425
hsa-miR-192-3p cccATTGGCAccttc CUGCCAAU m7b Created HPRO6_77119_G92457.1_137328425
hsa-miR-4735-3p cccattgGCACCTTc AAAGGUGC m7b Created HPRO6_77119_G92457.1_137328425

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134436561C>T COSM3905444 TCGA-BR-4280-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3650 ggACACACCcattga AGGUGUGU m7b (m7b->m6b) HHFKP_150971_cluster-23071_139_20
hsa-miR-4455 ggaCACACCCattga AGGGUGUG m7b Disrupted HHFKP_150971_cluster-23071_139_20
hsa-miR-4506 ggacacACCCATTga AAAUGGGU m7b Disrupted HHFKP_150971_cluster-23071_139_20
hsa-miR-4764-5p ggaCACATCCAttga UGGAUGUG m8a Created HHFKP_150971_cluster-23071_139_20
hsa-miR-609 ggacACACCCattga AGGGUGUU m6b Disrupted HHFKP_150971_cluster-23071_139_20

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134436553G>A COSM204657 TCGA-AA-3977-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3657 ctcatcgGGGACACa UGUGUCCC m7b Disrupted HHFKP_150971_cluster-23071_139_20

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134436531CTCT>C COSM1643773 pfg019T [stomach][NS][adenocarcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5197-3p ggaacatCTCTTCTTctt AAGAAGAG m8a Disrupted HPSD3_10307_G13976.1_137328389
hsa-miR-5197-3p ggaacatCTCTTCTTctt AAGAAGAG m8a Disrupted HPSEF_23144_G28010.1_137328383

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134434201C>A COSM1106575 TCGA-AP-A0LD-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-370-3p gagCAGCAGGgaagg GCCUGCUG m7b Created HHFKP_150969_cluster-23071_137_63
hsa-miR-670-5p gagcagCAGGGAagg GUCCCUGA m6b Created HHFKP_150969_cluster-23071_137_63
hsa-miR-6752-3p gagcaGCAGGGAagg UCCCUGCC m7a Created HHFKP_150969_cluster-23071_137_63
hsa-miR-6762-3p gAGCAGCCgggaagg UGGCUGCU m7b Disrupted HHFKP_150969_cluster-23071_137_63
hsa-miR-6893-3p gagCAGCAGGGaagg CCCUGCUG m8a Created HHFKP_150969_cluster-23071_137_63

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134431986C>T COSM3375159 TCGA-BJ-A3PU-01 [thyroid][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1276 tcgtcCTCTTTAacc UAAAGAGC m7a Disrupted HHFKP_150967_cluster-23071_135_205
hsa-miR-4311 tcgtcCTCTTTaacc GAAAGAGA m6b Disrupted HHFKP_150967_cluster-23071_135_205
hsa-miR-583 tcgtCCTCTTTaacc CAAAGAGG m7b Disrupted HHFKP_150967_cluster-23071_135_205

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134431973G>A COSM4723200 T3724 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4634 tgcctgCGCGCCatc CGGCGCGA m6b Disrupted HHFKP_150967_cluster-23071_135_205
hsa-miR-4783-5p tgcctGCGCGCCatc GGCGCGCC m7a Disrupted HHFKP_150967_cluster-23071_135_205
hsa-miR-6511b-5p tGCCTGCAcgccatc CUGCAGGC m7b Created HHFKP_150967_cluster-23071_135_205
hsa-miR-652-3p tgcctgcGCGCCATc AAUGGCGC m7b Disrupted HHFKP_150967_cluster-23071_135_205
hsa-miR-6811-5p tGCCTGCAcgccatc AUGCAGGC m7b Created HHFKP_150967_cluster-23071_135_205

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134431959G>A COSM1643772 pfg016T [stomach][NS][adenocarcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4267 agacgGAGCTGGgct UCCAGCUC m7b Disrupted HHHNE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013
hsa-miR-584-3p agacGGAACTGggct UCAGUUCC m7b Created HHHNE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013
hsa-miR-6736-3p agacGGAGCTGggct UCAGCUCC m7b Disrupted HHHNE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013
hsa-miR-4267 agacgGAGCTGGgct UCCAGCUC m7b Disrupted HHHSE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013
hsa-miR-584-3p agacGGAACTGggct UCAGUUCC m7b Created HHHSE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013
hsa-miR-6736-3p agacGGAGCTGggct UCAGCUCC m7b Disrupted HHHSE_15970_RXRA|NM_002957|exon_CDS|-5.3089531458018|-1.45135810655013

Mutation Mutation ID Sample Name Cancer Type
chr9:g.134426275A>G COSN8296415 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-299-3p ccCCCACATcacagg UAUGUGGG m7b (m7b->m6b) HHFCT_163498_cluster-23071_137_27
hsa-miR-4679 cccccacATCACAGg UCUGUGAU m7b Disrupted HHFCT_163498_cluster-23071_137_27
hsa-miR-6796-5p cCCCCACAtcacagg UUGUGGGG m7b Disrupted HHFCT_163498_cluster-23071_137_27

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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