SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024662
Gene Symbol: RPL6
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.112408638G>T COSM1264559 ESO-114 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4799-5p aaaagTTTAGAagcc AUCUAAAU m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864

Mutation Mutation ID Sample Name Cancer Type
chr12:g.112408608G>A COSM1318060 TCGA-AB-2864-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125b-1-3p gaAACCCGaagccaa ACGGGUUA m6b Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-3119 gaaacccAAAGCCAa UGGCUUUU m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4507 gaAACCCAaagccaa CUGGGUUG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-629-5p gAAACCCAaagccaa UGGGUUUA m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-6815-3p gaaacccGAAGCCAa UGGCUUCU m7a Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-6839-3p gAAACCCAAagccaa UUGGGUUU m8a (m7a->m8a) HHRBL_4021_BCBL1-2of3-SCL_7864

Mutation Mutation ID Sample Name Cancer Type
chr12:g.112408551A>C COSM1948696 RKO [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1587 agctaaaCAGCCCAa UUGGGCUG m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-27a-5p agctaaaAAGCCCaa AGGGCUUA m6b Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-3119 agctaAAAAGCCcaa UGGCUUUU m7b Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-3620-5p agctaaaCAGCCCAa GUGGGCUG m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4492 agctaaaCAGCCCaa GGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4498 agctaaaCAGCCCAa UGGGCUGG m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4656 agctaaaCAGCCCAa UGGGCUGA m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4675 agctaaACAGCCCaa GGGGCUGU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4687-3p agctaAACAGCCcaa UGGCUGUU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4741 agctaaACAGCCCaa CGGGCUGU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-5001-5p agctaaaCAGCCCaa AGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-6829-5p agctaaaCAGCCCAa UGGGCUGC m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-762 agctaaaCAGCCCaa GGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-1587 agctaaaCAGCCCAa UUGGGCUG m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-27a-5p agctaaaAAGCCCaa AGGGCUUA m6b Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-3119 agctaAAAAGCCcaa UGGCUUUU m7b Disrupted HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-3620-5p agctaaaCAGCCCAa GUGGGCUG m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4492 agctaaaCAGCCCaa GGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4498 agctaaaCAGCCCAa UGGGCUGG m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4656 agctaaaCAGCCCAa UGGGCUGA m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4675 agctaaACAGCCCaa GGGGCUGU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4687-3p agctaAACAGCCcaa UGGCUGUU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-4741 agctaaACAGCCCaa CGGGCUGU m7b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-5001-5p agctaaaCAGCCCaa AGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-6829-5p agctaaaCAGCCCAa UGGGCUGC m7a Created HHRBL_4021_BCBL1-2of3-SCL_7864
hsa-miR-762 agctaaaCAGCCCaa GGGGCUGG m6b Created HHRBL_4021_BCBL1-2of3-SCL_7864

Mutation Mutation ID Sample Name Cancer Type
chr12:g.112408431G>A COSM4038875 TCGA-CG-5726-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3677-5p ctcaGCCACTaaatc CAGUGGCC m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4321 ctcagCCGCTAAatc UUAGCGGU m7a Disrupted HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4460 ctcagCCACTAaatc AUAGUGGU m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4727-3p ctcagCCACTAaatc AUAGUGGG m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-3677-5p ctcaGCCACTaaatc CAGUGGCC m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4321 ctcagCCGCTAAatc UUAGCGGU m7a Disrupted HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4460 ctcagCCACTAaatc AUAGUGGU m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580
hsa-miR-4727-3p ctcagCCACTAaatc AUAGUGGG m6b Created HHRBL_4020_BCBL1-2of3-SCL_10580

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser