SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0079418
Gene Symbol: RPA3
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.7673310GCTA>A COSN15650087
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-3p tgcTGCTGCTacctgaaa AGCAGCAU m7a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-107 tgcTGCTGCTacctgaaa AGCAGCAU m7a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-15a-5p tgcTGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-15b-5p tgcTGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-16-5p tgcTGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-195-5p tgcTGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-424-5p TGCTGCTGctacctgaaa CAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-4524a-5p tgctGCTGCTAcctgaaa AUAGCAGC m7b Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-4524b-5p tgctGCTGCTAcctgaaa AUAGCAGC m7b Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-497-5p TGCTGCTGctacctgaaa CAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-646 tgctGCTGCTacctgaaa AAGCAGCU m6b Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-6838-5p tgcTGCTGCTacctgaaa AAGCAGCA m7b Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7673310A>GCTA COSN15651682
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p TGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-15b-5p TGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-16-5p TGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-195-5p TGCTGCTAcctgaaa UAGCAGCA m8a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-3927-3p tgctgCTACCTGaaa CAGGUAGA m7a Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-424-5p TGCTGCTGctacctgaaa CAGCAGCA m8a Created HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-4524b-5p tGCTGCTAcctgaaa AUAGCAGC m7b Disrupted HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-497-5p TGCTGCTGctacctgaaa CAGCAGCA m8a Created HHRBL_12970_BCBL1-2of3-SCL_12505
hsa-miR-6838-5p tgcTGCTGCTacctgaaa AAGCAGCA m7b Created HHRBL_12970_BCBL1-2of3-SCL_12505

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637938T>C COSM4569846 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255b-2-3p gAAGTGGTTggaaga AACCACUU m8a (m8a->m7a) HHFCT_141663_cluster-21252_3_36
hsa-miR-3180-5p gaagtggCTGGAAGa CUUCCAGA m7a Created HHFCT_141663_cluster-21252_3_36
hsa-miR-3180-5p gaagtggCTGGAAGa CUUCCAGA m7a Created HHFKP_129779_cluster-21252_4_86
hsa-miR-4691-3p gaaGTGGCTGGaaga CCAGCCAC m8a Created HHFKP_129779_cluster-21252_4_86
hsa-miR-6512-3p gaagtGGCTGGAAga UUCCAGCC m8a Created HHFKP_129779_cluster-21252_4_86
hsa-miR-6720-5p gaagtGGCTGGAAga UUCCAGCC m8a Created HHFKP_129779_cluster-21252_4_86
hsa-miR-6849-3p gaagtGGCTGGaaga ACCAGCCU m6b Created HHFKP_129779_cluster-21252_4_86
hsa-miR-1255b-2-3p gAAGTGGTTggaaga AACCACUU m8a (m8a->m7a) HHFKP_129779_cluster-21252_4_86
hsa-miR-6849-3p gaagtGGCTGGaaga ACCAGCCU m6b Created HHFCT_141663_cluster-21252_3_36
hsa-miR-6720-5p gaagtGGCTGGAAga UUCCAGCC m8a Created HHFCT_141663_cluster-21252_3_36
hsa-miR-6512-3p gaagtGGCTGGAAga UUCCAGCC m8a Created HHFCT_141663_cluster-21252_3_36
hsa-miR-4691-3p gaaGTGGCTGGaaga CCAGCCAC m8a Created HHFCT_141663_cluster-21252_3_36

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637874C>T COSM1452132 TCGA-D5-6540-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2392 aagatagCCATCCTt UAGGAUGG m7b Disrupted HHFCT_141663_cluster-21252_3_36
hsa-miR-6744-5p aagataGTCATCCtt UGGAUGAC m7b Created HHFCT_141663_cluster-21252_3_36

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637048C>T COSM3640684 TCGA-EE-A3AG-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1261 aaaTTATCCATgact AUGGAUAA m8a Disrupted HHFCT_141662_cluster-21252_2_15
hsa-miR-490-5p aaattATCCATGact CCAUGGAU m7b Disrupted HHFCT_141662_cluster-21252_2_15
hsa-miR-7154-5p aaattaTTCATGAct UUCAUGAA m7b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-8060 aaattaTTCATGact CCAUGAAG m6b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-1261 aaaTTATCCATgact AUGGAUAA m8a Disrupted HHFKP_129778_cluster-21252_3_329
hsa-miR-490-5p aaattATCCATGact CCAUGGAU m7b Disrupted HHFKP_129778_cluster-21252_3_329
hsa-miR-7154-5p aaattaTTCATGAct UUCAUGAA m7b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-8060 aaattaTTCATGact CCAUGAAG m6b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-1261 aaaTTATCCATgact AUGGAUAA m8a Disrupted HPTK7_7189_G10750.1_7676676
hsa-miR-490-5p aaattATCCATGact CCAUGGAU m7b Disrupted HPTK7_7189_G10750.1_7676676
hsa-miR-7154-5p aaattaTTCATGAct UUCAUGAA m7b Created HPTK7_7189_G10750.1_7676676
hsa-miR-8060 aaattaTTCATGact CCAUGAAG m6b Created HPTK7_7189_G10750.1_7676676

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637039C>T COSM3640683 TCGA-EE-A29E-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3915 atgactTTCCTCAgt UUGAGGAA m7b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-3928-3p atgactTTCCTCagt GGAGGAAC m6b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-4496 atgacTTTCCTCagt GAGGAAAC m7a Created HHFCT_141662_cluster-21252_2_15
hsa-miR-6834-5p atgactTCCCTCAgt GUGAGGGA m7b Disrupted HHFCT_141662_cluster-21252_2_15
hsa-miR-9500 atgaCTTCCCTcagt AAGGGAAG m7b Disrupted HHFCT_141662_cluster-21252_2_15
hsa-miR-3915 atgactTTCCTCAgt UUGAGGAA m7b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-3928-3p atgactTTCCTCagt GGAGGAAC m6b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-4496 atgacTTTCCTCagt GAGGAAAC m7a Created HHFKP_129778_cluster-21252_3_329
hsa-miR-6834-5p atgactTCCCTCAgt GUGAGGGA m7b Disrupted HHFKP_129778_cluster-21252_3_329
hsa-miR-9500 atgaCTTCCCTcagt AAGGGAAG m7b Disrupted HHFKP_129778_cluster-21252_3_329
hsa-miR-3915 atgactTTCCTCAgt UUGAGGAA m7b Created HPTK7_7189_G10750.1_7676676
hsa-miR-3928-3p atgactTTCCTCagt GGAGGAAC m6b Created HPTK7_7189_G10750.1_7676676
hsa-miR-4496 atgacTTTCCTCagt GAGGAAAC m7a Created HPTK7_7189_G10750.1_7676676
hsa-miR-6834-5p atgactTCCCTCAgt GUGAGGGA m7b Disrupted HPTK7_7189_G10750.1_7676676
hsa-miR-9500 atgaCTTCCCTcagt AAGGGAAG m7b Disrupted HPTK7_7189_G10750.1_7676676

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637021A>T COSM1488687 TCGA-AR-A256-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HHFKP_129778_cluster-21252_3_329
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HHFKP_129778_cluster-21252_3_329
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPCB1_37500_G47980.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPCB1_37500_G47980.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPCB1_37500_G47980.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPKTA_57136_G61753.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPKTA_57136_G61753.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPKTA_57136_G61753.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPKTB_9831_G12620.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPKTB_9831_G12620.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPKTB_9831_G12620.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPRO6_71649_G85586.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPRO6_71649_G85586.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPRO6_71649_G85586.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPRO8_13596_G18150.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPRO8_13596_G18150.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPRO8_13596_G18150.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPRT3_23825_G31822.1_7676647
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPRT3_23825_G31822.1_7676647
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPRT3_23825_G31822.1_7676647
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPSLB_6942_G8485.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPSLB_6942_G8485.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPSLB_6942_G8485.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPTA1_10579_G15133.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPTA1_10579_G15133.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPTA1_10579_G15133.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPTA3_17471_G28038.1_7676648
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPTA3_17471_G28038.1_7676648
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPTA3_17471_G28038.1_7676648
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HPTK1_27605_G32990.1_7676647
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HPTK1_27605_G32990.1_7676647
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HPTK1_27605_G32990.1_7676647
hsa-miR-186-3p atcctTTTGGGattg GCCCAAAG m6b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-4509 atCCTTTAGggattg ACUAAAGG m7b (m7b->m6b) HHFCT_141662_cluster-21252_2_15
hsa-miR-4733-5p atccttTTGGGATTg AAUCCCAA m8a Created HHFCT_141662_cluster-21252_2_15
Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637014G>A COSM3882480 TCGA-B7-5818-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr7:g.7637005G>T COSM1091854 TCGA-B5-A11H-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HHFCT_141662_cluster-21252_2_15
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HHFCT_141662_cluster-21252_2_15
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HHFKP_129778_cluster-21252_3_329
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HHFKP_129778_cluster-21252_3_329
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPCB1_37500_G47980.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPCB1_37500_G47980.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPCB1_37500_G47980.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPKTA_57136_G61753.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPKTA_57136_G61753.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPKTA_57136_G61753.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPKTB_9831_G12620.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPKTB_9831_G12620.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPKTB_9831_G12620.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPRO6_71649_G85586.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPRO6_71649_G85586.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPRO6_71649_G85586.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPRT3_23825_G31822.1_7676647
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPRT3_23825_G31822.1_7676647
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPRT3_23825_G31822.1_7676647
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPSLB_6942_G8485.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPSLB_6942_G8485.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPSLB_6942_G8485.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPTA1_10579_G15133.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPTA1_10579_G15133.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPTA1_10579_G15133.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPTA3_17471_G28038.1_7676648
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPTA3_17471_G28038.1_7676648
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPTA3_17471_G28038.1_7676648
hsa-miR-33a-3p gcAACATTattgatc CAAUGUUU m6b Created HPTK1_27605_G32990.1_7676647
hsa-miR-409-3p gCAACATTattgatc GAAUGUUG m7b Created HPTK1_27605_G32990.1_7676647
hsa-miR-96-3p gcaACATGATTgatc AAUCAUGU m8a Disrupted HPTK1_27605_G32990.1_7676647

Mutation Mutation ID Sample Name Cancer Type
chr7:g.7636947G>T COSN4894073 PCSI_0090_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4729 tatTAAATGAagccc UCAUUUAU m7a Created HHFCT_141661_cluster-21252_1_19
hsa-miR-516a-3p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19
hsa-miR-516b-3p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19
hsa-miR-5696 tatTAAATGAagccc CUCAUUUA m7b Created HHFCT_141661_cluster-21252_1_19
hsa-miR-7162-5p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19
hsa-miR-4729 tatTAAATGAagccc UCAUUUAU m7a Created HHFCT_141661_cluster-21252_1_19
hsa-miR-516a-3p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19
hsa-miR-516b-3p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19
hsa-miR-5696 tatTAAATGAagccc CUCAUUUA m7b Created HHFCT_141661_cluster-21252_1_19
hsa-miR-7162-5p tattaaAGGAAGCcc UGCUUCCU m7b Disrupted HHFCT_141661_cluster-21252_1_19

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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