SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_003721
Gene Symbol: RFXANK
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Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr19:g.19197016G>A COSM314767 S00936 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.19197015C>A COSM3822388 TCGA-JL-A3YW-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p gaggGAAAGAGgtgt ACUCUUUC m7b Created HHFKP_72765_cluster-11374_3_23
hsa-miR-3124-3p gagGGAAAGaggtgt ACUUUCCU m6b Created HHFKP_72765_cluster-11374_3_23
hsa-miR-4446-5p gAGGGAAAgaggtgt AUUUCCCU m7b Created HHFKP_72765_cluster-11374_3_23
Mutation Mutation ID Sample Name Cancer Type
chr19:g.19197001C>T COSM3970848 TCGA-DU-7302-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.19196997C>T COSM3530971 TCGA-EE-A2M5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3174 ctCTCACTAaccggc UAGUGAGU m7a (m6a->m7a) HHFKP_72765_cluster-11374_3_23
hsa-miR-4710 ctCTCACCaaccggc GGGUGAGG m6b Disrupted HHFKP_72765_cluster-11374_3_23
hsa-miR-4792 ctCTCACCaaccggc CGGUGAGC m6b Disrupted HHFKP_72765_cluster-11374_3_23
hsa-miR-7855-5p ctCTCACCAAccggc UUGGUGAG m8a Disrupted HHFKP_72765_cluster-11374_3_23
hsa-miR-921 ctCTCACTAaccggc CUAGUGAG m7b (m6b->m7b) HHFKP_72765_cluster-11374_3_23

Mutation Mutation ID Sample Name Cancer Type
chr19:g.19192831A>G COSN1212291 HCC118T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMB_3985_G4537.1_19303647
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMB_3985_G4537.1_19303647
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMB_3985_G4537.1_19303647
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMB_3985_G4537.1_19303647
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFCT_78670_cluster-11374_1_14
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HHFKP_72763_cluster-11374_1_8
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMA_7421_G8579.1_19303639
hsa-miR-499a-5p AGTCTTAAagggcca UUAAGACU m8a Disrupted HPKMB_3985_G4537.1_19303647
hsa-miR-6851-3p agtcttaAAGGGCCa UGGCCCUU m7b Disrupted HPKMB_3985_G4537.1_19303647

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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