SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0079549
Gene Symbol: RAPGEF5
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.22136119T>C COSM1450003 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3162-5p ggatcctTCCCTAAa UUAGGGAG m7a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-4278 ggatcctCCCCTAaa CUAGGGGG m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4533 ggaTCCTTCCctaaa UGGAAGGA m7b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-4747-5p ggatCCTTCCCTaaa AGGGAAGG m8a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-5196-5p ggatCCTTCCCTaaa AGGGAAGG m8a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-5584-5p ggatccTTCCCTaaa CAGGGAAA m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6750-5p ggatccTTCCCTaaa CAGGGAAC m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6783-5p ggatccTCCCCTAaa UAGGGGAA m7a Created HPSEF_21244_G25677.1_22175716
hsa-miR-6789-5p ggatcctCCCCTAaa GUAGGGGC m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6822-5p ggatccTTCCCTaaa CAGGGAAC m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6824-5p ggatccTCCCCTAaa GUAGGGGA m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6825-5p ggatCCTCCCCtaaa UGGGGAGG m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6894-5p ggATCCTCCcctaaa AGGAGGAU m7b (m6b->m7b) HPSEF_21244_G25677.1_22175716
hsa-miR-7106-5p ggaTCCTCCCctaaa UGGGAGGA m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-9500 ggatcCTTCCCTaaa AAGGGAAG m7b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-3162-5p ggatcctTCCCTAAa UUAGGGAG m7a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-4278 ggatcctCCCCTAaa CUAGGGGG m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4533 ggaTCCTTCCctaaa UGGAAGGA m7b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-4747-5p ggatCCTTCCCTaaa AGGGAAGG m8a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-5196-5p ggatCCTTCCCTaaa AGGGAAGG m8a Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-5584-5p ggatccTTCCCTaaa CAGGGAAA m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6750-5p ggatccTTCCCTaaa CAGGGAAC m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6783-5p ggatccTCCCCTAaa UAGGGGAA m7a Created HPSEF_21244_G25677.1_22175716
hsa-miR-6789-5p ggatcctCCCCTAaa GUAGGGGC m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6822-5p ggatccTTCCCTaaa CAGGGAAC m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-6824-5p ggatccTCCCCTAaa GUAGGGGA m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6825-5p ggatCCTCCCCtaaa UGGGGAGG m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-6894-5p ggATCCTCCcctaaa AGGAGGAU m7b (m6b->m7b) HPSEF_21244_G25677.1_22175716
hsa-miR-7106-5p ggaTCCTCCCctaaa UGGGAGGA m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-9500 ggatcCTTCCCTaaa AAGGGAAG m7b Disrupted HPSEF_21244_G25677.1_22175716

Mutation Mutation ID Sample Name Cancer Type
chr7:g.22136104G>A COSM3880209 TCGA-BR-8680-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-329-5p tcacAAAACCTacag GAGGUUUU m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4464 tcacaAAACCTacag AAGGUUUG m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4748 tcacaAAACCTacag GAGGUUUG m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-329-5p tcacAAAACCTacag GAGGUUUU m7b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4464 tcacaAAACCTacag AAGGUUUG m6b Created HPSEF_21244_G25677.1_22175716
hsa-miR-4748 tcacaAAACCTacag GAGGUUUG m6b Created HPSEF_21244_G25677.1_22175716

Mutation Mutation ID Sample Name Cancer Type
chr7:g.22136102C>G COSM4970957 SJHGG049_A [central_nervous_system][brainstem][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-20b-3p acaaagcCTACAGag ACUGUAGU m6b Disrupted HPSEF_21244_G25677.1_22175716
hsa-miR-20b-3p acaaagcCTACAGag ACUGUAGU m6b Disrupted HPSEF_21244_G25677.1_22175716

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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