SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0057116
Gene Symbol: RAPGEF4
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Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr2:g.173020660C>T COSM4086802 TCGA-HU-A4GN-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation Mutation ID Sample Name Cancer Type
chr2:g.173020658G>A COSM1401317 TCGA-CM-6162-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.173001299G>C COSM3407062 TCGA-06-6695-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-216a-3p atgCACTGTGttttt UCACAGUG m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-152-3p aTGCACTGtgttttt UCAGUGCA m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-148b-3p aTGCACTGtgttttt UCAGUGCA m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-148a-3p aTGCACTGtgttttt UCAGUGCA m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-128-3p atgCACTGTGttttt UCACAGUG m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-759 atgCACTCTGttttt GCAGAGUG m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-3681-3p atgCACTGTGTtttt ACACAGUG m8a Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-4797-5p atgcACTCTGTtttt GACAGAGU m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-759 atgCACTCTGttttt GCAGAGUG m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-4797-5p atgcACTCTGTtttt GACAGAGU m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-128-3p atgCACTGTGttttt UCACAGUG m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-216a-3p atgCACTGTGttttt UCACAGUG m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-3681-3p atgCACTGTGTtttt ACACAGUG m8a Disrupted HHFCT_91076_cluster-13241_5_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.173001282CTT>C COSM4720345 T3262 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-142-5p taaatgACTTTATtatg CAUAAAGU m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-6507-3p taaatGACTTTattatg CAAAGUCC m6b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-633 taaatgACTATTAtg CUAAUAGU m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-5590-3p taaatgACTTTATTatg AAUAAAGU m8a Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-142-5p taaatgACTTTATtatg CAUAAAGU m7b Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-5590-3p taaatgACTTTATTatg AAUAAAGU m8a Disrupted HHFCT_91076_cluster-13241_5_8
hsa-miR-633 taaatgACTATTAtg CUAAUAGU m7b Created HHFCT_91076_cluster-13241_5_8
hsa-miR-6507-3p taaatGACTTTattatg CAAAGUCC m6b Disrupted HHFCT_91076_cluster-13241_5_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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