SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0085814
Gene Symbol: PSCA
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.142682347G>C COSN7668129 PCSI_0307_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-105-3p tgacacACATCCGcc ACGGAUGU m7b Created HHFKP_143623_cluster-22134_2_250
hsa-miR-4764-5p tgacaCACATCCgcc UGGAUGUG m7b Created HHFKP_143623_cluster-22134_2_250

Mutation Mutation ID Sample Name Cancer Type
chr8:g.142682018C>A COSM1313767 TCGA-FD-A3N6-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-499b-3p tcacGTGATGTgaca AACAUCAC m7b Created HHFCT_155791_cluster-22134_1_113
hsa-miR-499a-3p tcacGTGATGTgaca AACAUCAC m7b Created HHFCT_155791_cluster-22134_1_113
hsa-miR-3120-3p tcacgTGCTGTGaca CACAGCAA m7a Disrupted HHFCT_155791_cluster-22134_1_113
hsa-miR-3120-3p tcacgTGCTGTGaca CACAGCAA m7a Disrupted HHFKP_143622_cluster-22134_1_334
hsa-miR-499a-3p tcacGTGATGTgaca AACAUCAC m7b Created HHFKP_143622_cluster-22134_1_334
hsa-miR-499b-3p tcacGTGATGTgaca AACAUCAC m7b Created HHFKP_143622_cluster-22134_1_334

Mutation Mutation ID Sample Name Cancer Type
chr8:g.142682011T>G COSM3897320 TCGA-BR-A4PE-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6767-3p aagaacaGCACGTGc CCACGUGC m7b Created HHFKP_143622_cluster-22134_1_334
hsa-miR-6767-3p aagaacaGCACGTGc CCACGUGC m7b Created HHFCT_155791_cluster-22134_1_113

Mutation Mutation ID Sample Name Cancer Type
chr8:g.142681996T>C COSM1239970 ESO-859 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1471 tactACGCGGGCaag GCCCGCGU m8a Created HHFKP_143622_cluster-22134_1_334
hsa-miR-4707-3p tactacGCGGGCaag AGCCCGCC m6b Created HHFKP_143622_cluster-22134_1_334
hsa-miR-662 tactACGTGGGcaag UCCCACGU m7b Disrupted HHFKP_143622_cluster-22134_1_334

Mutation Mutation ID Sample Name Cancer Type
chr8:g.142681995G>A COSM4762243 pfg181T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7852-3p ctACTACATgggcaa UAUGUAGU m7b (m6b->m7b) HHFKP_143622_cluster-22134_1_334
hsa-miR-662 ctactACGTGGGcaa UCCCACGU m7b Disrupted HHFKP_143622_cluster-22134_1_334
hsa-miR-4641 ctactaCATGGGCAa UGCCCAUG m8a Created HHFKP_143622_cluster-22134_1_334

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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