SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001300824
Gene Symbol: PRDM5
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.120695197G>A COSM390234 LUAD_E01047 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3972 cCTGGCAGaatgcca CUGCCAGC m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-4727-5p ccTGGCAGAatgcca AUCUGCCA m7b (m7b->m6b) HHFKP_107739_cluster-17783_1_14
hsa-miR-4769-3p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHFKP_107739_cluster-17783_1_14
hsa-miR-4776-3p ccTGGCAAaatgcca CUUGCCAU m6b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-5006-5p CCTGGCAAaatgcca UUGCCAGG m8a Created HHFKP_107739_cluster-17783_1_14
hsa-miR-6738-3p cctGGCAGAAtgcca CUUCUGCC m7b Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-6817-5p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHFKP_107739_cluster-17783_1_14
hsa-miR-3972 cCTGGCAGaatgcca CUGCCAGC m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4727-5p ccTGGCAGAatgcca AUCUGCCA m7b (m7b->m6b) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4769-3p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4776-3p ccTGGCAAaatgcca CUUGCCAU m6b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5006-5p CCTGGCAAaatgcca UUGCCAGG m8a Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6738-3p cctGGCAGAAtgcca CUUCUGCC m7b Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6817-5p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-3972 cCTGGCAGaatgcca CUGCCAGC m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4727-5p ccTGGCAGAatgcca AUCUGCCA m7b (m7b->m6b) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4769-3p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4776-3p ccTGGCAAaatgcca CUUGCCAU m6b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5006-5p CCTGGCAAaatgcca UUGCCAGG m8a Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6738-3p cctGGCAGAAtgcca CUUCUGCC m7b Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6817-5p ccTGGCAGAatgcca UCUGCCAU m7a (m7a->m6a) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597

Mutation Mutation ID Sample Name Cancer Type
chr4:g.120695196A>G COSM3008205 RKO [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1256 ctggcagAATGCCag AGGCAUUG m6b Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-4642 ctggcagGATGCCAg AUGGCAUC m7b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-4793-5p ctggCAGGATGccag ACAUCCUG m7b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-6727-3p cTGGCAGGAtgccag UCCUGCCA m8a (m7a->m8a) HHFKP_107739_cluster-17783_1_14
hsa-miR-6738-3p ctGGCAGAAtgccag CUUCUGCC m7b (m7b->m6b) HHFKP_107739_cluster-17783_1_14
hsa-miR-1256 ctggcagAATGCCag AGGCAUUG m6b Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4642 ctggcagGATGCCAg AUGGCAUC m7b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4793-5p ctggCAGGATGccag ACAUCCUG m7b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6727-3p cTGGCAGGAtgccag UCCUGCCA m8a (m7a->m8a) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6738-3p ctGGCAGAAtgccag CUUCUGCC m7b (m7b->m6b) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-1256 ctggcagAATGCCag AGGCAUUG m6b Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4642 ctggcagGATGCCAg AUGGCAUC m7b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4793-5p ctggCAGGATGccag ACAUCCUG m7b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6727-3p cTGGCAGGAtgccag UCCUGCCA m8a (m7a->m8a) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-6738-3p ctGGCAGAAtgccag CUUCUGCC m7b (m7b->m6b) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597

Mutation Mutation ID Sample Name Cancer Type
chr4:g.120695193G>A COSM1050494 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1256 gcagAATGCCagttt AGGCAUUG m6b Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-4720-5p gcagaATGCCAGttt CCUGGCAU m7b Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-4774-5p gcagaATACCAGttt UCUGGUAU m7b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-4799-3p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-5588-5p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-5681b gcagAATACCagttt AGGUAUUG m6b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-582-3p gcagaatACCAGTTt UAACUGGU m7b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-630 gcAGAATACcagttt AGUAUUCU m7b (m6b->m7b) HHFKP_107739_cluster-17783_1_14
hsa-miR-1256 gcagAATGCCagttt AGGCAUUG m6b Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4720-5p gcagaATGCCAGttt CCUGGCAU m7b Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4774-5p gcagaATACCAGttt UCUGGUAU m7b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4799-3p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5588-5p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5681b gcagAATACCagttt AGGUAUUG m6b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-582-3p gcagaatACCAGTTt UAACUGGU m7b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-630 gcAGAATACcagttt AGUAUUCU m7b (m6b->m7b) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-1256 gcagAATGCCagttt AGGCAUUG m6b Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4720-5p gcagaATGCCAGttt CCUGGCAU m7b Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4774-5p gcagaATACCAGttt UCUGGUAU m7b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-4799-3p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5588-5p gcagaATGCCAGTtt ACUGGCAU m8a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-5681b gcagAATACCagttt AGGUAUUG m6b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-582-3p gcagaatACCAGTTt UAACUGGU m7b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-630 gcAGAATACcagttt AGUAUUCU m7b (m6b->m7b) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597

Mutation Mutation ID Sample Name Cancer Type
chr4:g.120695173T>C COSM4569541 CSCC-40-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-100-3p taagAAGCTTacaag CAAGCUUG m6b Created HHFKP_107739_cluster-17783_1_14
hsa-miR-103a-2-5p tAAGAAGCTtacaag AGCUUCUU m8a (m7a->m8a) HHFKP_107739_cluster-17783_1_14
hsa-miR-30a-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-30b-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-30c-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-30d-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-30e-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHFKP_107739_cluster-17783_1_14
hsa-miR-100-3p taagAAGCTTacaag CAAGCUUG m6b Created HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-103a-2-5p tAAGAAGCTtacaag AGCUUCUU m8a (m7a->m8a) HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30a-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30b-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30c-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30d-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30e-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHNE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-100-3p taagAAGCTTacaag CAAGCUUG m6b Created HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-103a-2-5p tAAGAAGCTtacaag AGCUUCUU m8a (m7a->m8a) HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30a-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30b-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30c-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30d-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597
hsa-miR-30e-5p taagaaGTTTACAag UGUAAACA m7a Disrupted HHHSE_14244_PRDM5|NM_018699|exon_CDS|-4.79114773563871|-1.75498018846597

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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