SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0055470
Gene Symbol: POLR1A
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.86078246G>A COSM3799248 TCGA-BT-A3PJ-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-5p ccttTTTAAGTacac ACUUAAAC m7a Created HHFKP_76817_cluster-13756_10_53
hsa-miR-3613-3p ccTTTTTGagtacac ACAAAAAA m6b Disrupted HHFKP_76817_cluster-13756_10_53
hsa-miR-371a-5p ccttTTTGAGTacac ACUCAAAC m7a Disrupted HHFKP_76817_cluster-13756_10_53
hsa-miR-371b-5p cctTTTTGAGTacac ACUCAAAA m8a Disrupted HHFKP_76817_cluster-13756_10_53
hsa-miR-373-5p cctTTTTGAGTacac ACUCAAAA m8a Disrupted HHFKP_76817_cluster-13756_10_53
hsa-miR-616-5p cctTTTTGAGTacac ACUCAAAA m8a Disrupted HHFKP_76817_cluster-13756_10_53
hsa-miR-888-5p ccttTTTGAGTAcac UACUCAAA m8a Disrupted HHFKP_76817_cluster-13756_10_53

Mutation Mutation ID Sample Name Cancer Type
chr2:g.86065315C>G COSM3364842 TCGA-CZ-4865-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4428 ccttTCTCCTTccat CAAGGAGA m7b Disrupted HHFKP_76816_cluster-13756_9_12
hsa-miR-4533 cctttcTCCTTCCAt UGGAAGGA m8a Disrupted HHFKP_76816_cluster-13756_9_12
hsa-miR-6079 cctttctGCTTCCAt UUGGAAGC m7b Created HHFKP_76816_cluster-13756_9_12
hsa-miR-671-5p cctttctGCTTCCat AGGAAGCC m6b Created HHFKP_76816_cluster-13756_9_12
hsa-miR-6828-5p cctttcTGCTTCCat AGGAAGCA m7b Created HHFKP_76816_cluster-13756_9_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.86065306C>G COSM4787502 CHC1545T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1265 ttcCATCCTGaagcc CAGGAUGU m7a Disrupted HHFCT_82685_cluster-13756_15_8
hsa-miR-2392 ttCCATCCTgaagcc UAGGAUGG m7b (m7b->m6b) HHFCT_82685_cluster-13756_15_8
hsa-miR-1265 ttcCATCCTGaagcc CAGGAUGU m7a Disrupted HHFKP_76816_cluster-13756_9_12
hsa-miR-2392 ttCCATCCTgaagcc UAGGAUGG m7b (m7b->m6b) HHFKP_76816_cluster-13756_9_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.86065299C>T COSM3583797 TCGA-EE-A2MJ-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1276 ctgaaGCTCTTTccg UAAAGAGC m7b Created HHFCT_82685_cluster-13756_15_8
hsa-miR-3158-3p ctgAAGCCCTTtccg AAGGGCUU m8a Disrupted HHFCT_82685_cluster-13756_15_8
hsa-miR-5681a ctgaagCCCTTTCcg AGAAAGGG m7b Disrupted HHFCT_82685_cluster-13756_15_8
hsa-miR-1276 ctgaaGCTCTTTccg UAAAGAGC m7b Created HHFKP_76816_cluster-13756_9_12
hsa-miR-3158-3p ctgAAGCCCTTtccg AAGGGCUU m8a Disrupted HHFKP_76816_cluster-13756_9_12
hsa-miR-5681a ctgaagCCCTTTCcg AGAAAGGG m7b Disrupted HHFKP_76816_cluster-13756_9_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.86065292G>T COSM3714257 24T [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3125 cctTTCCTCTgtgga UAGAGGAA m7b Created HHFCT_82685_cluster-13756_15_8
hsa-miR-3916 cctTTCCTCTgtgga AAGAGGAA m7b Created HHFCT_82685_cluster-13756_15_8
hsa-miR-6847-5p ccttTCCTCTGTgga ACAGAGGA m8a Created HHFCT_82685_cluster-13756_15_8
hsa-miR-6859-5p cctTTCCTCTgtgga GAGAGGAA m7b Created HHFCT_82685_cluster-13756_15_8
hsa-miR-3125 cctTTCCTCTgtgga UAGAGGAA m7b Created HHFKP_76816_cluster-13756_9_12
hsa-miR-3916 cctTTCCTCTgtgga AAGAGGAA m7b Created HHFKP_76816_cluster-13756_9_12
hsa-miR-6847-5p ccttTCCTCTGTgga ACAGAGGA m8a Created HHFKP_76816_cluster-13756_9_12
hsa-miR-6859-5p cctTTCCTCTgtgga GAGAGGAA m7b Created HHFKP_76816_cluster-13756_9_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.86065291C>T COSM723003 TCGA-46-3768-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-191-5p ctTTCCGTTGtggac CAACGGAA m8a Created HHFCT_82685_cluster-13756_15_8
hsa-miR-191-5p ctTTCCGTTGtggac CAACGGAA m8a Created HHFKP_76816_cluster-13756_9_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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