SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0052016
Gene Symbol: POLD1
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.50403588G>A COSM3933133 B22-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1182 gggcccAGACCCTCa GAGGGUCU m8a Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-296-3p gggcccaAACCCTCa GAGGGUUG m7a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-4486 ggGCCCAGaccctca GCUGGGCG m6b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-612 ggGCCCAGaccctca GCUGGGCA m6b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-6724-5p GGGCCCAGaccctca CUGGGCCC m8a Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-6740-5p gggCCCAAACcctca AGUUUGGG m7b Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6773-5p GGGCCCAAaccctca UUGGGCCC m8a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6860 ggGCCCAGaccctca ACUGGGCA m6b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-1182 gggcccAGACCCTCa GAGGGUCU m8a Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-296-3p gggcccaAACCCTCa GAGGGUUG m7a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-4486 ggGCCCAGaccctca GCUGGGCG m6b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-612 ggGCCCAGaccctca GCUGGGCA m6b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-6724-5p GGGCCCAGaccctca CUGGGCCC m8a Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-6740-5p gggCCCAAACcctca AGUUUGGG m7b Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6773-5p GGGCCCAAaccctca UUGGGCCC m8a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6860 ggGCCCAGaccctca ACUGGGCA m6b Disrupted HHFKP_74243_cluster-11708_2_13

Mutation Mutation ID Sample Name Cancer Type
chr19:g.50403576C>T COSM3537208 TCGA-D3-A2JD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1252-3p acCTCATTTctcggg CAAAUGAG m7b (m6b->m7b) HHFKP_74243_cluster-11708_2_13
hsa-miR-143-3p accTCATCTCtcggg UGAGAUGA m7b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-4770 accTCATCTCtcggg UGAGAUGA m7b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-539-5p acctcATTTCTCggg GGAGAAAU m7b Created HHFKP_74243_cluster-11708_2_13
hsa-miR-5680 acctCATTTCTCggg GAGAAAUG m8a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6088 accTCATCTCTcggg AGAGAUGA m8a Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-1252-3p acCTCATTTctcggg CAAAUGAG m7b (m6b->m7b) HHFKP_74243_cluster-11708_2_13
hsa-miR-143-3p accTCATCTCtcggg UGAGAUGA m7b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-4770 accTCATCTCtcggg UGAGAUGA m7b Disrupted HHFKP_74243_cluster-11708_2_13
hsa-miR-539-5p acctcATTTCTCggg GGAGAAAU m7b Created HHFKP_74243_cluster-11708_2_13
hsa-miR-5680 acctCATTTCTCggg GAGAAAUG m8a Created HHFKP_74243_cluster-11708_2_13
hsa-miR-6088 accTCATCTCTcggg AGAGAUGA m8a Disrupted HHFKP_74243_cluster-11708_2_13

Mutation Mutation ID Sample Name Cancer Type
chr19:g.50403499T>C COSM1726544 198T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1911-3p gGCCTGGTccacctt CACCAGGC m7b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-3619-3p ggccTGGTCCacctt GGGACCAU m6b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-4640-5p ggcCTGGCCCAcctt UGGGCCAG m8a Created HPRO6_39147_G46327.1_50906769
hsa-miR-4726-5p ggcCTGGCCCacctt AGGGCCAG m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-4776-5p ggccTGGTCCACctt GUGGACCA m8a Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-4800-5p ggcctGGTCCACctt AGUGGACC m7b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-541-3p ggcctgGCCCACCtt UGGUGGGC m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-654-5p ggcctgGCCCACCtt UGGUGGGC m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-8071 ggcctgGTCCACCtt CGGUGGAC m7b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-1911-3p gGCCTGGTccacctt CACCAGGC m7b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-3619-3p ggccTGGTCCacctt GGGACCAU m6b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-4640-5p ggcCTGGCCCAcctt UGGGCCAG m8a Created HPRO6_39147_G46327.1_50906769
hsa-miR-4726-5p ggcCTGGCCCacctt AGGGCCAG m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-4776-5p ggccTGGTCCACctt GUGGACCA m8a Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-4800-5p ggcctGGTCCACctt AGUGGACC m7b Disrupted HPRO6_39147_G46327.1_50906769
hsa-miR-541-3p ggcctgGCCCACCtt UGGUGGGC m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-654-5p ggcctgGCCCACCtt UGGUGGGC m7b Created HPRO6_39147_G46327.1_50906769
hsa-miR-8071 ggcctgGTCCACCtt CGGUGGAC m7b Disrupted HPRO6_39147_G46327.1_50906769

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser