SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_025208
Gene Symbol: PDGFD
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr11:g.103996122C>T COSM3868312 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr11:g.103996116C>T COSM1179857 SWE-38 [prostate][NS][adenoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-3p tcaagTCTGATGact CAUCAGAA m7a Created HHFKP_25546_uc001php.1_3_8
hsa-miR-4494 tcaAGTCTGatgact CCAGACUG m6b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-499b-5p tcAAGTCTGatgact ACAGACUU m7b (m6b->m7b) HHFKP_25546_uc001php.1_3_8
hsa-miR-5188 tcaaGTCCGATgact AAUCGGAC m7b Disrupted HHFKP_25546_uc001php.1_3_8
hsa-miR-2115-3p tcaagTCTGATGact CAUCAGAA m7a Created HHFKP_25546_uc001php.1_3_8
hsa-miR-4494 tcaAGTCTGatgact CCAGACUG m6b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-499b-5p tcAAGTCTGatgact ACAGACUU m7b (m6b->m7b) HHFKP_25546_uc001php.1_3_8
hsa-miR-5188 tcaaGTCCGATgact AAUCGGAC m7b Disrupted HHFKP_25546_uc001php.1_3_8

Mutation Mutation ID Sample Name Cancer Type
chr11:g.103996110C>T COSM4778620 RK241_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-3p cCGATGATtactttg CAUCAUCG m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548a-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ab ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ad-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ae-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ak ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548am-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ap-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548aq-5p ccgatgaTTACTTTg GAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ar-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548as-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548au-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ay-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548b-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548bb-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548c-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548d-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548h-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548i ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548j-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548o-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548w ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548y ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-559 ccgatgaTTACTTTg UAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-136-3p cCGATGATtactttg CAUCAUCG m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548a-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ab ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ad-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ae-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ak ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548am-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ap-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548aq-5p ccgatgaTTACTTTg GAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ar-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548as-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548au-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548ay-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548b-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548bb-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548c-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548d-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548h-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548i ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548j-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548o-5p ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548w ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-548y ccgatgaTTACTTTg AAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8
hsa-miR-559 ccgatgaTTACTTTg UAAAGUAA m7b Created HHFKP_25546_uc001php.1_3_8

Mutation Mutation ID Sample Name Cancer Type
chr11:g.103996096AA>A COSM1684290 NCI-H522 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4662a-5p tgTGGCTAAacctgga UUAGCCAA m7a (m7a->m6a) HHFKP_25546_uc001php.1_3_8
hsa-miR-4662a-5p tgTGGCTAAacctgga UUAGCCAA m7a (m7a->m6a) HHFKP_25546_uc001php.1_3_8

Mutation Mutation ID Sample Name Cancer Type
chr11:g.103909393G>TTTG COSN1125552 HX5T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3144-3p tttttttGGTATATa AUAUACCU m7a Disrupted HHFKP_25545_uc001php.1_2_21

Mutation Mutation ID Sample Name Cancer Type
chr11:g.103907486A>T COSN8729258 AOCS-064-3-3 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-3p cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-130b-3p cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-19a-3p ctTTTGCACttctaa UGUGCAAA m7b (m7b->m6b) HPKTA_12362_G13344.1_103778222
hsa-miR-19b-3p ctTTTGCACttctaa UGUGCAAA m7b (m7b->m6b) HPKTA_12362_G13344.1_103778222
hsa-miR-301a-3p cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-301b-3p cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-3666 cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-4295 cttTTGCACTtctaa CAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-454-3p cttTTGCACTtctaa UAGUGCAA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-4795-5p cttttgCACTTCTaa AGAAGUGG m7a Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-5197-3p cttttgCTCTTCTaa AAGAAGAG m7b Created HPKTA_12362_G13344.1_103778222
hsa-miR-519a-3p ctttTGCACTTctaa AAAGUGCA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-519b-3p ctttTGCACTTctaa AAAGUGCA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-519c-3p ctttTGCACTTctaa AAAGUGCA m7b Disrupted HPKTA_12362_G13344.1_103778222
hsa-miR-548aw cTTTTGCACttctaa GUGCAAAA m8a (m8a->m7a) HPKTA_12362_G13344.1_103778222

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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