SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001165899
Gene Symbol: PDE4D
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.59988629G>C COSM592969 TCGA-64-5781-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273c tcaTGTCGCaatatt GGCGACAA m6b Disrupted HPSLC_15872_G18868.1_59284457
hsa-miR-1302 tcaTGTCCCAAtatt UUGGGACA m8a Created HPSLC_15872_G18868.1_59284457
hsa-miR-3122 tcatGTCCCAAtatt GUUGGGAC m7b Created HPSLC_15872_G18868.1_59284457
hsa-miR-3683 tcATGTCGCAatatt UGCGACAU m8a Disrupted HPSLC_15872_G18868.1_59284457
hsa-miR-3913-5p tcatGTCCCAAtatt UUUGGGAC m7b Created HPSLC_15872_G18868.1_59284457
hsa-miR-4298 tcaTGTCCCAatatt CUGGGACA m7b Created HPSLC_15872_G18868.1_59284457
hsa-miR-450a-1-3p tcatgTCCCAATatt AUUGGGAA m7a Created HPSLC_15872_G18868.1_59284457

Mutation Mutation ID Sample Name Cancer Type
chr5:g.59988629G>A COSM3855778 TCGA-BR-8382-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6808-3p tcatGTCACAatatt GUGUGACC m6b Created HPSLC_15872_G18868.1_59284457
hsa-miR-758-3p tcatGTCACAAtatt UUUGUGAC m7b Created HPSLC_15872_G18868.1_59284457
hsa-miR-1273c tcaTGTCGCaatatt GGCGACAA m6b Disrupted HPSLC_15872_G18868.1_59284457
hsa-miR-4504 tcaTGTCACAatatt UGUGACAA m7a Created HPSLC_15872_G18868.1_59284457
hsa-miR-489-3p tcATGTCACaatatt GUGACAUC m7a (m6a->m7a) HPSLC_15872_G18868.1_59284457
hsa-miR-542-3p tcaTGTCACAatatt UGUGACAG m7a Created HPSLC_15872_G18868.1_59284457
hsa-miR-3683 tcATGTCGCAatatt UGCGACAU m8a Disrupted HPSLC_15872_G18868.1_59284457

Mutation Mutation ID Sample Name Cancer Type
chr5:g.59988628C>T COSM738442 TCGA-22-4601-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3683 cATGTCGCAatattc UGCGACAU m8a (m8a->m7a) HPSLC_15872_G18868.1_59284457

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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