SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_030571
Gene Symbol: NDFIP1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.142135749G>A COSM1434809 TCGA-CM-6162-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-378a-5p gtggGTCAGGAtgat CUCCUGAC m7b Created HHFKP_120288_cluster-18299_2_16
hsa-miR-4750-3p gtGGGTCAGGatgat CCUGACCC m8a Created HHFKP_120288_cluster-18299_2_16
hsa-miR-4793-5p gtgggtCAGGATGat ACAUCCUG m7b Created HHFKP_120288_cluster-18299_2_16
hsa-miR-551a gTGGGTCGggatgat GCGACCCA m7b Disrupted HHFKP_120288_cluster-18299_2_16
hsa-miR-551b-3p gTGGGTCGggatgat GCGACCCA m7b Disrupted HHFKP_120288_cluster-18299_2_16
hsa-miR-7114-3p GTGGGTCAggatgat UGACCCAC m8a Created HHFKP_120288_cluster-18299_2_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.142135748C>T COSM449025 TCGA-AO-A0J8-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4733-5p tgtgggTTGGGATga AAUCCCAA m7b Created HHFKP_120288_cluster-18299_2_16
hsa-miR-551a tgTGGGTCGggatga GCGACCCA m7b (m7b->m6b) HHFKP_120288_cluster-18299_2_16
hsa-miR-551b-3p tgTGGGTCGggatga GCGACCCA m7b (m7b->m6b) HHFKP_120288_cluster-18299_2_16
hsa-miR-7114-3p tGTGGGTCgggatga UGACCCAC m7b Disrupted HHFKP_120288_cluster-18299_2_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.142135739T>G COSM257503 TCGA-AG-3892-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4668-3p tgaGGATTTTgtggg GAAAAUCC m7b Disrupted HHFKP_120288_cluster-18299_2_16
hsa-miR-5003-5p tgaggaTGTTGTGgg UCACAACA m7b Created HHFKP_120288_cluster-18299_2_16
hsa-miR-8063 tgagGATTTTGtggg UCAAAAUC m7b Disrupted HHFKP_120288_cluster-18299_2_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.142132305C>T COSM3611831 TCGA-EE-A180-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-133a-3p gagaGGACCAAggct UUUGGUCC m7b Disrupted HHFCT_130661_cluster-18299_5_16
hsa-miR-133b gagaGGACCAAggct UUUGGUCC m7b Disrupted HHFCT_130661_cluster-18299_5_16
hsa-miR-3909 gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHFCT_130661_cluster-18299_5_16
hsa-miR-640 gagaGGATCAaggct AUGAUCCA m6b Created HHFCT_130661_cluster-18299_5_16
hsa-miR-6852-3p gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHFCT_130661_cluster-18299_5_16
hsa-miR-133a-3p gagaGGACCAAggct UUUGGUCC m7b Disrupted HHFKP_120287_cluster-18299_1_223
hsa-miR-133b gagaGGACCAAggct UUUGGUCC m7b Disrupted HHFKP_120287_cluster-18299_1_223
hsa-miR-3909 gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHFKP_120287_cluster-18299_1_223
hsa-miR-640 gagaGGATCAaggct AUGAUCCA m6b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-6852-3p gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHFKP_120287_cluster-18299_1_223
hsa-miR-133a-3p gagaGGACCAAggct UUUGGUCC m7b Disrupted HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-133b gagaGGACCAAggct UUUGGUCC m7b Disrupted HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-3909 gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-640 gagaGGATCAaggct AUGAUCCA m6b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6852-3p gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-133a-3p gagaGGACCAAggct UUUGGUCC m7b Disrupted HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-133b gagaGGACCAAggct UUUGGUCC m7b Disrupted HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-3909 gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-640 gagaGGATCAaggct AUGAUCCA m6b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6852-3p gAGAGGACcaaggct UGUCCUCU m7b Disrupted HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069

Mutation Mutation ID Sample Name Cancer Type
chr5:g.142132297G>A COSM4585578 CHEWS026 [bone][fibula][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3183 atgaagcAGAGAGGa GCCUCUCU m7b Created HHFCT_130661_cluster-18299_5_16
hsa-miR-4723-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHFCT_130661_cluster-18299_5_16
hsa-miR-6728-3p atgaAGCAGAGAgga UCUCUGCU m8a Created HHFCT_130661_cluster-18299_5_16
hsa-miR-6769b-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHFCT_130661_cluster-18299_5_16
hsa-miR-6817-3p atgaagCAGAGAGga UCUCUCUG m7b Created HHFCT_130661_cluster-18299_5_16
hsa-miR-6845-3p atgaagcGGAGAGGa CCUCUCCU m7a Disrupted HHFCT_130661_cluster-18299_5_16
hsa-miR-3183 atgaagcAGAGAGGa GCCUCUCU m7b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-3977 aTGAAGCAgagagga GUGCUUCA m7b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-4723-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-6728-3p atgaAGCAGAGAgga UCUCUGCU m8a Created HHFKP_120287_cluster-18299_1_223
hsa-miR-6769b-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-6817-3p atgaagCAGAGAGga UCUCUCUG m7b Created HHFKP_120287_cluster-18299_1_223
hsa-miR-6845-3p atgaagcGGAGAGGa CCUCUCCU m7a Disrupted HHFKP_120287_cluster-18299_1_223
hsa-miR-3183 atgaagcAGAGAGGa GCCUCUCU m7b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-3977 aTGAAGCAgagagga GUGCUUCA m7b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-4723-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6728-3p atgaAGCAGAGAgga UCUCUGCU m8a Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6769b-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6817-3p atgaagCAGAGAGga UCUCUCUG m7b Created HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6845-3p atgaagcGGAGAGGa CCUCUCCU m7a Disrupted HHHNA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-3183 atgaagcAGAGAGGa GCCUCUCU m7b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-3977 aTGAAGCAgagagga GUGCUUCA m7b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-4723-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6728-3p atgaAGCAGAGAgga UCUCUGCU m8a Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6769b-3p atgaagcAGAGAGGa CCCUCUCU m7b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6817-3p atgaagCAGAGAGga UCUCUCUG m7b Created HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069
hsa-miR-6845-3p atgaagcGGAGAGGa CCUCUCCU m7a Disrupted HHHSA_18285_NDFIP1|NM_030571|exon_CDS|-5.24787882716145|1.48765219982069

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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