SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002454
Gene Symbol: MTRR
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.7900075A>T COSN8493170 2275_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p ttaaaGAAAGAGgat ACUCUUUC m7b Disrupted HHFCT_126739_cluster-17956_12_25
hsa-miR-6881-3p ttaaagaAAGAGGAt AUCCUCUU m7b Disrupted HHFCT_126739_cluster-17956_12_25
hsa-miR-130b-5p ttaaaGAAAGAGgat ACUCUUUC m7b Disrupted HHFKP_116745_cluster-17956_16_25
hsa-miR-6881-3p ttaaagaAAGAGGAt AUCCUCUU m7b Disrupted HHFKP_116745_cluster-17956_16_25

Mutation Mutation ID Sample Name Cancer Type
chr5:g.7900023G>A COSM1258056 SJHGG029_R [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4659a-3p tttaaaAGAAGAAAa UUUCUUCU m8a Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4659b-3p tttaaaAGAAGAAAa UUUCUUCU m8a Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4778-3p tttaaAAGAAGAaaa UCUUCUUC m7a Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-6875-3p tttaaaaGAAGAAaa AUUCUUCC m6b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586

Mutation Mutation ID Sample Name Cancer Type
chr5:g.7900012C>T COSM1070452 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3609 accctggTCACTTTa CAAAGUGA m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-3677-5p accctGGCCACTtta CAGUGGCC m7b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4435 accCTGGCCActtta AUGGCCAG m7b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4796-3p accctggCCACTTTa UAAAGUGG m7b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-548ah-5p accctggTCACTTTa AAAAGUGA m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-6753-5p aCCCTGGTcacttta CACCAGGG m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586

Mutation Mutation ID Sample Name Cancer Type
chr5:g.7899999A>G COSM5002665 PDA_084 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181b-2-3p agaagCAGTGAaaac CUCACUGA m6b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-181b-3p agaagCAGTGAaaac CUCACUGA m6b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-335-3p agaagcaATGAAAAc UUUUUCAU m7b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4317 agaaGCAATGaaaac ACAUUGCC m6b Disrupted HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4420 agaagCAGTGAaaac GUCACUGA m6b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-5096 agaagcaGTGAAAac GUUUCACC m6b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-653-3p agaagCAGTGAAaac UUCACUGG m7a Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-6890-3p agaaGCAGTGaaaac CCACUGCC m6b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586

Mutation Mutation ID Sample Name Cancer Type
chr5:g.7899990C>T COSM3618086 TCGA-FW-A3TV-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4735-5p tgaaAAATTAGaagc CCUAAUUU m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-4775 tgaAAAATTAgaagc UUAAUUUU m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586
hsa-miR-576-5p tgaaaaATTAGAAgc AUUCUAAU m7b Created HHKTA_10337_NM_002454|2160|2199|6.40365527566005|0.745457851394586

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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