SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0002546
Gene Symbol: MSRA
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.10319940C>G COSM1194894 NCI-H322M [lung][NS][carcinoma][bronchioloalveolar_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p ccgaCCTCTGCcaag AGCAGAGG m7b Disrupted HHFCT_153339_cluster-21830_11_6
hsa-miR-4257 ccgACCTCTGccaag CCAGAGGU m7b Disrupted HHFCT_153339_cluster-21830_11_6
hsa-miR-96-5p ccgacctGTGCCAAg UUUGGCAC m7b Created HHFCT_153339_cluster-21830_11_6
hsa-miR-1271-5p ccgacctGTGCCAAg CUUGGCAC m7b Created HHFCT_153339_cluster-21830_11_6
hsa-miR-7150 ccgacctCTGCCAag CUGGCAGG m6b Disrupted HHFCT_153339_cluster-21830_11_6

Mutation Mutation ID Sample Name Cancer Type
chr8:g.10319937C>T COSM1551093 TCGA-75-6214-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4756-3p tacccgATCTCTGcc CCAGAGAU m7b Created HHFCT_153339_cluster-21830_11_6
hsa-miR-2467-3p tacccgaCCTCTGCc AGCAGAGG m7b Disrupted HHFCT_153339_cluster-21830_11_6
hsa-miR-4257 tacccgACCTCTGcc CCAGAGGU m7b Disrupted HHFCT_153339_cluster-21830_11_6

Mutation Mutation ID Sample Name Cancer Type
chr8:g.10319923G>A COSM307059 MB_Exm1017 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4663 accGCTCAGCcatct AGCUGAGC m7b Created HHFCT_153339_cluster-21830_11_6
hsa-miR-8077 accgCTCAGCCatct GGCUGAGU m7a Created HHFCT_153339_cluster-21830_11_6
hsa-miR-889-5p accgctCAGCCATct AAUGGCUG m7b Created HHFCT_153339_cluster-21830_11_6

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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