SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0028579
Gene Symbol: MED13L
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.116015190C>T COSM1214831 587220 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6793-3p aagagaTTGGGGAag UCCCCAAC m7a Created HHFCT_34778_cluster-5787_40_8
hsa-miR-6763-3p aagagatCGGGGAag CUCCCCGG m6b Disrupted HHFCT_34778_cluster-5787_40_8
hsa-miR-2355-5p aagagatTGGGGAag AUCCCCAG m6b Created HHFCT_34778_cluster-5787_40_8

Mutation Mutation ID Sample Name Cancer Type
chr12:g.116015163A>G COSM1731416 095T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4445-5p ctccACAATCatatg AGAUUGUU m6b Disrupted HHFCT_34778_cluster-5787_40_8
hsa-miR-4318 ctCCACAGTcatatg CACUGUGG m7b (m6b->m7b) HHFCT_34778_cluster-5787_40_8
hsa-miR-943 ctccACAGTCAtatg CUGACUGU m7b Created HHFCT_34778_cluster-5787_40_8

Mutation Mutation ID Sample Name Cancer Type
chr12:g.116015156G>TG COSM1628397 RK016_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3619-3p atcatATGGTCCatc GGGACCAU m7b Disrupted HHFCT_34778_cluster-5787_40_8
hsa-miR-4517 aTCATATTggtccatc AAAUAUGA m7b Created HHFCT_34778_cluster-5787_40_8
hsa-miR-4776-5p atcataTGGTCCAtc GUGGACCA m7b Disrupted HHFCT_34778_cluster-5787_40_8

Mutation Mutation ID Sample Name Cancer Type
chr12:g.116015155G>A COSM1322735 TCGA-42-2590-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3134 tcatatgATCCATCg UGAUGGAU m7b Created HHFCT_34778_cluster-5787_40_8
hsa-miR-3619-3p tcatATGGTCCatcg GGGACCAU m7b Disrupted HHFCT_34778_cluster-5787_40_8
hsa-miR-4776-5p tcataTGGTCCAtcg GUGGACCA m7b Disrupted HHFCT_34778_cluster-5787_40_8
hsa-miR-5007-3p tCATATGATccatcg AUCAUAUG m8a (m7a->m8a) HHFCT_34778_cluster-5787_40_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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