SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0028555
Gene Symbol: MED13L
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.115970653C>T COSM430432 TCGA-A1-A0SH-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3682-3p acATCATCAaccatc UGAUGAUA m7a (m7a->m6a) HHFCT_34761_cluster-5787_22_7
hsa-miR-563 acatcaTCAACCatc AGGUUGAC m6b Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-569 acatCATTAACcatc AGUUAAUG m7b Created HHFCT_34761_cluster-5787_22_7
hsa-miR-580-5p acATCATTAaccatc UAAUGAUU m7a (m6a->m7a) HHFCT_34761_cluster-5787_22_7
hsa-miR-758-5p acatcatCAACCATc GAUGGUUG m7b Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-1272 aCATCATCaaccatc GAUGAUGA m7a Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-1322 aCATCATCaaccatc GAUGAUGC m7a Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-3682-3p acATCATCAaccatc UGAUGAUA m7a (m7a->m6a) HHFKP_33547_cluster-5787_26_25
hsa-miR-563 acatcaTCAACCatc AGGUUGAC m6b Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-569 acatCATTAACcatc AGUUAAUG m7b Created HHFKP_33547_cluster-5787_26_25
hsa-miR-580-5p acATCATTAaccatc UAAUGAUU m7a (m6a->m7a) HHFKP_33547_cluster-5787_26_25
hsa-miR-758-5p acatcatCAACCATc GAUGGUUG m7b Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-1272 aCATCATCaaccatc GAUGAUGA m7a Disrupted HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-1322 aCATCATCaaccatc GAUGAUGC m7a Disrupted HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-3682-3p acATCATCAaccatc UGAUGAUA m7a (m7a->m6a) HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-563 acatcaTCAACCatc AGGUUGAC m6b Disrupted HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-569 acatCATTAACcatc AGUUAAUG m7b Created HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-580-5p acATCATTAaccatc UAAUGAUU m7a (m6a->m7a) HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-758-5p acatcatCAACCATc GAUGGUUG m7b Disrupted HHKTA_47710_NM_015335|6044|6083|1.47110999575974|0.328687470909897
hsa-miR-1272 aCATCATCaaccatc GAUGAUGA m7a Disrupted HPCB1_10877_G13546.1_116408458
hsa-miR-1322 aCATCATCaaccatc GAUGAUGC m7a Disrupted HPCB1_10877_G13546.1_116408458
hsa-miR-3682-3p acATCATCAaccatc UGAUGAUA m7a (m7a->m6a) HPCB1_10877_G13546.1_116408458
hsa-miR-563 acatcaTCAACCatc AGGUUGAC m6b Disrupted HPCB1_10877_G13546.1_116408458
hsa-miR-569 acatCATTAACcatc AGUUAAUG m7b Created HPCB1_10877_G13546.1_116408458
hsa-miR-580-5p acATCATTAaccatc UAAUGAUU m7a (m6a->m7a) HPCB1_10877_G13546.1_116408458
hsa-miR-758-5p acatcatCAACCATc GAUGGUUG m7b Disrupted HPCB1_10877_G13546.1_116408458
hsa-miR-1272 aCATCATCaaccatc GAUGAUGA m7a Disrupted HPRO6_21747_G25329.1_116408464
hsa-miR-1322 aCATCATCaaccatc GAUGAUGC m7a Disrupted HPRO6_21747_G25329.1_116408464
hsa-miR-3682-3p acATCATCAaccatc UGAUGAUA m7a (m7a->m6a) HPRO6_21747_G25329.1_116408464
hsa-miR-563 acatcaTCAACCatc AGGUUGAC m6b Disrupted HPRO6_21747_G25329.1_116408464
hsa-miR-569 acatCATTAACcatc AGUUAAUG m7b Created HPRO6_21747_G25329.1_116408464
hsa-miR-580-5p acATCATTAaccatc UAAUGAUU m7a (m6a->m7a) HPRO6_21747_G25329.1_116408464
hsa-miR-758-5p acatcatCAACCATc GAUGGUUG m7b Disrupted HPRO6_21747_G25329.1_116408464

Mutation Mutation ID Sample Name Cancer Type
chr12:g.115970629A>T COSM691916 TCGA-60-2698-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-197-5p ccagccaTCTACCCc CGGGUAGA m7b Created HHFCT_34761_cluster-5787_22_7
hsa-miR-3132 ccagccaTCTACCCc UGGGUAGA m7b Created HHFCT_34761_cluster-5787_22_7
hsa-miR-4259 ccagCCAACTacccc CAGUUGGG m6b Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-4703-3p ccagcCAACTACccc UGUAGUUG m7b Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-4715-5p ccaGCCAACTacccc AAGUUGGC m7b Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-6842-3p CCAGCCAActacccc UUGGCUGG m8a Disrupted HHFCT_34761_cluster-5787_22_7
hsa-miR-197-5p ccagccaTCTACCCc CGGGUAGA m7b Created HHFKP_33547_cluster-5787_26_25
hsa-miR-3132 ccagccaTCTACCCc UGGGUAGA m7b Created HHFKP_33547_cluster-5787_26_25
hsa-miR-4259 ccagCCAACTacccc CAGUUGGG m6b Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-4703-3p ccagcCAACTACccc UGUAGUUG m7b Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-4715-5p ccaGCCAACTacccc AAGUUGGC m7b Disrupted HHFKP_33547_cluster-5787_26_25
hsa-miR-6842-3p CCAGCCAActacccc UUGGCUGG m8a Disrupted HHFKP_33547_cluster-5787_26_25

Mutation Mutation ID Sample Name Cancer Type
chr12:g.115969030G>A COSM3811144 TCGA-D8-A27G-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-5p tgACTGGAaacctcc GUCCAGUU m6b Created HHFCT_34760_cluster-5787_21_12
hsa-miR-3180-5p tgaCTGGAAacctcc CUUCCAGA m6b Created HHFCT_34760_cluster-5787_21_12

Mutation Mutation ID Sample Name Cancer Type
chr12:g.115969027C>T COSM4575067 10-P1058 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1270 ctgggaATCTCCAtt CUGGAGAU m7b Created HHFCT_34760_cluster-5787_21_12
hsa-miR-3689d ctgggaACCTCCatt GGGAGGUG m6b Disrupted HHFCT_34760_cluster-5787_21_12
hsa-miR-4802-5p ctgggaaCCTCCATt UAUGGAGG m7b Disrupted HHFCT_34760_cluster-5787_21_12
hsa-miR-6086 ctgggAACCTCCatt GGAGGUUG m7a Disrupted HHFCT_34760_cluster-5787_21_12
hsa-miR-620 ctgggaATCTCCATt AUGGAGAU m8a Created HHFCT_34760_cluster-5787_21_12
hsa-miR-6851-5p ctgggaACCTCCatt AGGAGGUG m6b Disrupted HHFCT_34760_cluster-5787_21_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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